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adds EBI submission of shotgun samples #2303

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Merged
merged 6 commits into from
Sep 26, 2017
Merged

adds EBI submission of shotgun samples #2303

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55daff1
adds EBI submission of shotgun samples
antgonza Sep 20, 2017
d4eb316
flake8 fixes
antgonza Sep 20, 2017
f2d974f
fix error
antgonza Sep 20, 2017
7da8e24
fixing comments after meeting
antgonza Sep 21, 2017
a12f831
addressing @josenavas comments
antgonza Sep 21, 2017
d01d1e4
Merge branch 'release-candidate' of https://github.com/biocore/qiita …
antgonza Sep 26, 2017
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flake8 fixes
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@antgonza
antgonza committed Sep 20, 2017
commit d4eb316216cf795c53e56fa2e6d52f198673b898
2 changes: 1 addition & 1 deletion qiita_db/support_files/patches/60.sql
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@@ -1,4 +1,4 @@
-- Sep 120, 2017
-- Sep 20, 2017
-- Allowing per_sample_FASTQ to be submitted to EBI

UPDATE qiita.artifact_type SET can_be_submitted_to_ebi = true WHERE artifact_type='per_sample_FASTQ';
1 change: 0 additions & 1 deletion qiita_ware/ebi.py
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Expand Up @@ -958,7 +958,6 @@ def generate_demultiplexed_fastq(self, rewrite_fastq=False, mtime=None):
self.prep_template.get_category('run_prefix'))]
rps.sort(key=lambda x: x[1])
demux_samples = set()
fpb = partial(join, self.full_ebi_dir)
for sn, rp in rps:
for i, (bn, fp) in enumerate(fps):
if bn.startswith(rp):
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