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Expose the hictk::BinTable class #50

Merged
merged 12 commits into from
Oct 21, 2024
Merged

Expose the hictk::BinTable class #50

merged 12 commits into from
Oct 21, 2024

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robomics
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@robomics robomics commented May 7, 2024

TODOs:

  • add bindings for hictk::BinTable
  • make hictkpy::BinTable constructible from pd.DataFrames of bins
  • support running queries on hictkpy::BinTables (and return the queried bins as pd.DataFrames)
  • allow constructing .cool/hic files by providing hictkpy::BinTables or pd.DataFrames instead of chromosomes + bin_size (this also enables support for tables of bins with variable sizes)

@robomics robomics marked this pull request as draft August 21, 2024 21:58
@robomics robomics added the enhancement New feature or request label Oct 21, 2024
@robomics robomics marked this pull request as ready for review October 21, 2024 19:05
@robomics robomics changed the title Expose BinTable class Expose the hictk::BinTable class Oct 21, 2024
@robomics robomics merged commit 0f4a2f2 into main Oct 21, 2024
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@robomics robomics deleted the feature/bin-table branch October 21, 2024 20:37
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