Test hictkpy against Python 3.13 #442
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Copyright (C) 2023 Roberto Rossini (roberros@uio.no) | |
| # SPDX-License-Identifier: MIT | |
| name: Build wheels | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [main] | |
| paths: | |
| - ".github/workflows/build-conan-deps.yml" | |
| - ".github/workflows/wheels.yml" | |
| - "cmake/**" | |
| - "src/**" | |
| - "test/**" | |
| - "utils/devel/stubgen.py" | |
| - "CMakeLists.txt" | |
| - "conanfile.py" | |
| - "pyproject.toml" | |
| tags: | |
| - "v*.*.*" | |
| pull_request: | |
| paths: | |
| - ".github/workflows/build-conan-deps.yml" | |
| - ".github/workflows/wheels.yml" | |
| - "cmake/**" | |
| - "src/**" | |
| - "test/**" | |
| - "utils/devel/stubgen.py" | |
| - "CMakeLists.txt" | |
| - "conanfile.py" | |
| - "pyproject.toml" | |
| release: | |
| types: | |
| - published | |
| # https://stackoverflow.com/a/72408109 | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| matrix-factory: | |
| name: Generate job matrix | |
| runs-on: ubuntu-latest | |
| outputs: | |
| matrix: ${{ steps.set-result.outputs.matrix }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.13" | |
| - name: Install cibuildwheel | |
| run: pip install 'cibuildwheel>=2.21' | |
| - name: Generate matrix | |
| id: set-result | |
| run: | | |
| CIBW_ARCHS_LINUX=x86_64 cibuildwheel \ | |
| --print-build-identifiers \ | |
| --platform linux | | |
| jq -nRc '{"wheel-config": inputs, "os": "ubuntu-latest", "arch": "x86_64"}' | | |
| tee configs.json | |
| if [ '${{ github.event_name }}' != 'pull_request' ]; then | |
| CIBW_ARCHS_LINUX=aarch64 cibuildwheel \ | |
| --print-build-identifiers \ | |
| --platform linux | | |
| jq -nRc '{"wheel-config": inputs, "os": "ubuntu-latest", "arch": "aarch64"}' | | |
| tee -a configs.json | |
| fi | |
| CIBW_ARCHS_MACOS=x86_64 cibuildwheel \ | |
| --print-build-identifiers \ | |
| --platform macos | | |
| jq -nRc '{"wheel-config": inputs, "os": "macos-13", "arch": "x86_64"}' | | |
| tee -a configs.json | |
| CIBW_ARCHS_MACOS=arm64 cibuildwheel \ | |
| --print-build-identifiers \ | |
| --platform macos | | |
| jq -nRc '{"wheel-config": inputs, "os": "macos-14", "arch": "arm64"}' | | |
| tee -a configs.json | |
| CIBW_ARCHS_WINDOWS=AMD64 cibuildwheel \ | |
| --print-build-identifiers \ | |
| --platform windows | | |
| jq -nRc '{"wheel-config": inputs, "os": "windows-2019", "arch": "AMD64"}' | | |
| tee -a configs.json | |
| MATRIX="$(jq -sc < configs.json)" | |
| echo "matrix={\"include\": $MATRIX }" | tee -a "$GITHUB_OUTPUT" | |
| build-conan-deps-linux-x86: | |
| name: Build Conan deps (Linux x86_64) | |
| uses: paulsengroup/hictkpy/.github/workflows/build-conan-deps.yml@main | |
| with: | |
| arch: x86_64 | |
| os: manylinux_2_28 | |
| build-conan-deps-linux-arm64: | |
| name: Build Conan deps (Linux arm64) | |
| uses: paulsengroup/hictkpy/.github/workflows/build-conan-deps.yml@main | |
| with: | |
| arch: aarch64 | |
| os: manylinux_2_28 | |
| build-conan-deps-macos-x86: | |
| name: Build Conan deps (macOS x86_64) | |
| uses: paulsengroup/hictkpy/.github/workflows/build-conan-deps.yml@main | |
| with: | |
| arch: x86_64 | |
| os: macos-13 | |
| build-conan-deps-macos-arm64: | |
| name: Build Conan deps (macOS arm64) | |
| uses: paulsengroup/hictkpy/.github/workflows/build-conan-deps.yml@main | |
| with: | |
| arch: arm64 | |
| os: macos-14 | |
| build-conan-deps-windows-x86: | |
| name: Build Conan deps (Windows x86_64) | |
| uses: paulsengroup/hictkpy/.github/workflows/build-conan-deps.yml@main | |
| with: | |
| arch: AMD64 | |
| os: windows-2019 | |
| build-sdist: | |
| name: Build SDist | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build SDist | |
| run: pipx run build --sdist | |
| - name: Check metadata | |
| run: pipx run twine check dist/* | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: sdist | |
| path: dist/*.tar.gz | |
| build-wheels: | |
| name: Build Wheels | |
| needs: | |
| - matrix-factory | |
| - build-conan-deps-linux-x86 | |
| - build-conan-deps-linux-arm64 | |
| - build-conan-deps-macos-x86 | |
| - build-conan-deps-macos-arm64 | |
| - build-conan-deps-windows-x86 | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: ${{ fromJson(needs.matrix-factory.outputs.matrix) }} | |
| env: | |
| CONAN_HOME: "${{ github.workspace }}/.conan2" | |
| HICTKPY_CONAN_INSTALL_ARGS: "--settings=compiler.cppstd=17;--settings=build_type=Release;--build=never;--options=*/*:shared=False" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up QEMU | |
| if: startsWith(matrix.os, 'ubuntu') | |
| uses: docker/setup-qemu-action@v3 | |
| with: | |
| platforms: linux/amd64,linux/arm64 | |
| - name: Restore Conan cache (Linux; x86_64) | |
| if: startsWith(matrix.os, 'ubuntu') && matrix.arch == 'x86_64' | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: ${{ needs.build-conan-deps-linux-x86.outputs.conan-key }} | |
| path: ${{ env.CONAN_HOME }}/p | |
| fail-on-cache-miss: true | |
| - name: Restore Conan cache (Linux; aarch64) | |
| if: | | |
| github.event_name != 'pull_request' && | |
| startsWith(matrix.os, 'ubuntu') && | |
| matrix.arch == 'aarch64' | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: ${{ needs.build-conan-deps-linux-arm64.outputs.conan-key }} | |
| path: ${{ env.CONAN_HOME }}/p | |
| fail-on-cache-miss: true | |
| - name: Restore Conan cache (macOS; x86_64) | |
| if: startsWith(matrix.os, 'macos') && matrix.arch == 'x86_64' | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: ${{ needs.build-conan-deps-macos-x86.outputs.conan-key }} | |
| path: ${{ env.CONAN_HOME }}/p | |
| fail-on-cache-miss: true | |
| - name: Restore Conan cache (macOS; aarch64) | |
| if: startsWith(matrix.os, 'macos') && matrix.arch == 'arm64' | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: ${{ needs.build-conan-deps-macos-arm64.outputs.conan-key }} | |
| path: ${{ env.CONAN_HOME }}/p | |
| fail-on-cache-miss: true | |
| - name: Restore Conan cache (Windows; AMD64) | |
| if: startsWith(matrix.os, 'windows') && matrix.arch == 'AMD64' | |
| uses: actions/cache/restore@v4 | |
| with: | |
| key: ${{ needs.build-conan-deps-windows-x86.outputs.conan-key }} | |
| path: ${{ needs.build-conan-deps-windows-x86.outputs.conan-home }}\p | |
| fail-on-cache-miss: true | |
| - name: Build wheels | |
| uses: pypa/cibuildwheel@v2.21 | |
| with: | |
| only: ${{ matrix.wheel-config }} | |
| env: | |
| CIBW_BUILD_VERBOSITY: 1 | |
| CIBW_ENVIRONMENT_LINUX: > | |
| PIP_VERBOSE=1 | |
| HICTK_CI=1 | |
| CONAN_HOME='/host${{ env.CONAN_HOME }}' | |
| CIBW_ENVIRONMENT_MACOS: > | |
| CC=clang | |
| CXX=clang++ | |
| PIP_VERBOSE=1 | |
| HICTK_CI=1 | |
| MACOSX_DEPLOYMENT_TARGET=10.15 | |
| HICTKPY_CONAN_INSTALL_ARGS="${{ env.HICTKPY_CONAN_INSTALL_ARGS }};-s:h os.version=${{ env.MACOSX_DEPLOYMENT_TARGET }}" | |
| CIBW_ENVIRONMENT_WINDOWS: > | |
| PIP_VERBOSE=1 | |
| HICTK_CI=1 | |
| CIBW_ENVIRONMENT_PASS_LINUX: > | |
| CONAN_HOME | |
| HICTKPY_CONAN_INSTALL_ARGS | |
| CIBW_MANYLINUX_X86_64_IMAGE: manylinux_2_28 | |
| CIBW_MANYLINUX_AARCH64_IMAGE: manylinux_2_28 | |
| - name: Verify clean directory | |
| run: git diff --exit-code | |
| - name: Upload wheels | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: "wheels-${{ matrix.wheel-config }}" | |
| path: wheelhouse/*.whl | |
| if-no-files-found: error | |
| retention-days: 1 | |
| package-artifacts: | |
| name: Package artifacts | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-sdist | |
| - build-wheels | |
| steps: | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: artifacts | |
| - name: Archive artifacts | |
| run: | | |
| mkdir dist/ | |
| find artifacts -type f -name "hictkpy*.whl" -exec cp '{}' dist/ \; | |
| find artifacts -type f -name "hictkpy*.tar.gz" -exec cp '{}' dist/ \; | |
| tar -cf dist.tar dist/ | |
| - name: Upload artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: dist | |
| path: dist.tar | |
| if-no-files-found: error | |
| retention-days: 7 | |
| pypi-publish: | |
| name: Upload release to PyPI | |
| if: github.event_name == 'release' && github.event.action == 'published' | |
| needs: [package-artifacts] | |
| environment: | |
| name: PyPI | |
| url: https://pypi.org/p/hictkpy | |
| permissions: | |
| id-token: write | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: dist | |
| path: dist | |
| merge-multiple: true | |
| - name: Extract dist.tar | |
| run: | | |
| tar -xf dist.tar | |
| rm dist.tar | |
| - name: Upload wheels to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| attestations: true | |
| print-hash: true | |
| verbose: true | |
| build-wheels-status-check: | |
| name: Status Check (Build wheels) | |
| if: ${{ always() }} | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-sdist | |
| - build-wheels | |
| - package-artifacts | |
| - pypi-publish | |
| steps: | |
| - name: Collect job results | |
| if: | | |
| needs.build-sdist.result != 'success' || | |
| needs.build-wheels.result != 'success' || | |
| needs.package-artifacts.result != 'success' || | |
| ( | |
| needs.pypi-publish.result != 'success' && | |
| needs.pypi-publish.result != 'skipped' | |
| ) | |
| run: exit 1 |