Skip to content

@maranasgroup maranasgroup

Change the repository type filter

All

    Repositories list

    42 repositories

    • chemo-enz

      Public
      Expanding chemical synthesis planning to explore chemo-enzymatic pathways using minimal transitions
      Jupyter Notebook
      •0•0•0•0•Updated Jan 5, 2025Jan 5, 2025

    • CatPred

      Public
      Machine Learning models for in vitro enzyme kinetic parameter prediction
      Python
      •
      MIT License
      •1•18•1•0•Updated Dec 28, 2024Dec 28, 2024

    • novoStoic2.0

      Public
      novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection
      Jupyter Notebook
      •7•8•0•0•Updated Aug 23, 2024Aug 23, 2024

    • KETCHUP

      Public
      Kinetic Estimation Tool Capturing Heterogeneous Datasets Using Pyomo (KETCHUP)
      Python
      •0•1•0•0•Updated Jun 28, 2024Jun 28, 2024

    • optstoic-gams

      Public
      optStoic-minFlux/minRxn code for PMID: 26530953
      GAMS
      •
      Apache License 2.0
      •2•0•0•0•Updated Apr 25, 2024Apr 25, 2024

    • CatPred-DB

      Public
      Python
      •
      MIT License
      •0•0•1•0•Updated Apr 11, 2024Apr 11, 2024

    • iSace_GSM

      Public
      Repository of a genome-scale metabolic model for Saccharomyces cerevisiae
      metabolismyeastconstraint-based-modelingmetabolic-modelsaccharomyces-cerevisiae
      Jupyter Notebook
      •1•0•0•0•Updated Mar 11, 2024Mar 11, 2024

    • yeastsMFA

      Public
      Repository for yeasts MFA related files
      metabolismmetabolic-flux-analysis
      MATLAB
      •1•2•0•0•Updated Mar 11, 2024Mar 11, 2024

    • iPotri3463

      Public
      This repository contains multi-tissue metabolic models of populus trichocarpa
      Jupyter Notebook
      •1•0•0•0•Updated Feb 15, 2024Feb 15, 2024

    • dGPredictor

      Public
      Jupyter Notebook
      •2•10•1•1•Updated Dec 15, 2023Dec 15, 2023

    • iCTH669

      Public
      Repository for the Stoichiometric Genome-Scale Model (GSM) of Clostridium thermocellum
      HTML
      •0•3•0•0•Updated Oct 11, 2023Oct 11, 2023

    • CNN_seq_CoV2

      Public
      Python
      •0•1•0•0•Updated Sep 28, 2023Sep 28, 2023

    • scRBA

      Public
      S. cerevisiae Resource Balance Analysis model
      metabolismflux-balance-analysisconstraint-based-modelingresource-balance-analysis
      GAMS
      •
      MIT License
      •2•1•0•0•Updated Jun 8, 2023Jun 8, 2023

    • EnzRank

      Public
      PureBasic
      •2•3•0•0•Updated May 18, 2023May 18, 2023

    • iRhto_memote

      Public
      Memote-created repository for Rhodosporidium toruloides model iRhto
      metabolismyeastconstraint-based-modelingmetabolic-model
      HTML
      •
      Creative Commons Attribution 4.0 International
      •3•0•0•0•Updated Mar 1, 2023Mar 1, 2023

    • k-sacce306

      Public
      K-FIT kinetic models for Saccharomyces cerevisiae CEN.PK and BY4741
      MATLAB
      •2•0•0•0•Updated Dec 22, 2022Dec 22, 2022

    • Protein-InDelMaker

      Public
      Python
      •1•3•0•0•Updated Nov 28, 2022Nov 28, 2022

    • kcat-km

      Public
      Predictive models for estimating kcat and km of enzymes from sequence/structure information
      Python
      •1•3•0•0•Updated Nov 14, 2022Nov 14, 2022

    • SNPeffect

      Public
      Python
      •0•1•0•0•Updated Feb 24, 2022Feb 24, 2022

    • k-ctherm138

      Public
      MATLAB
      •0•1•0•0•Updated Feb 7, 2022Feb 7, 2022

    • ensembledocking

      Public
      Codes for ensemble docking
      0•0•0•0•Updated Jan 10, 2022Jan 10, 2022

    • SteadyState-MFA

      Public
      Genome scale steady state 13C metabolic flux analysis
      MATLAB
      •3•2•2•0•Updated Nov 30, 2021Nov 30, 2021

    • uncFBA

      Public
      metabolismuncertainty-propagationflux-balance-analysisconstraint-based-modeling
      Jupyter Notebook
      •1•1•0•0•Updated Nov 2, 2021Nov 2, 2021

    • dGPredictor-py2

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•2•2•1•Updated Aug 9, 2021Aug 9, 2021

    • K-FIT

      Public
      MATLAB
      •2•1•0•0•Updated Jul 19, 2021Jul 19, 2021

    • NN_MM-GBSA_CoV2

      Public
      Python
      •1•6•0•0•Updated Mar 26, 2021Mar 26, 2021

    • DMMM

      Public
      Dynamic multi-species metabolic modeling of Clostridia co-culture
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Feb 23, 2021Feb 23, 2021

    • UCYN-A-symbiosis-metabolic-modeling

      Public
      GAMS
      •1•0•0•0•Updated Feb 9, 2021Feb 9, 2021

    • iIsor_memote

      Public
      Repository for Issatchenkia orientalis SD108 genome-scale metabolic model iIsor
      Other
      •1•0•0•0•Updated Feb 5, 2021Feb 5, 2021

    • optstoic-python

      Public
      Jupyter Notebook
      •
      MIT License
      •4•3•0•2•Updated Aug 22, 2020Aug 22, 2020