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maranasgroup

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  1. Optimization_Methods_in_Metabolic_Networks Optimization_Methods_in_Metabolic_Networks Public

    Examples for Optimization Methods in Metabolic Networks (ISBN: 978-1-119-02849-9)

    GAMS 8 2

  2. SteadyState-MFA SteadyState-MFA Public

    Genome scale steady state 13C metabolic flux analysis

    MATLAB 4 4

  3. Nonstationary-MFA Nonstationary-MFA Public

    Genome-scale nonstationary 13C metabolic flux analysis

    MATLAB 1

  4. CatPred CatPred Public

    Machine Learning models for in vitro enzyme kinetic parameter prediction

    Python 96 30

  5. novoStoic2.0 novoStoic2.0 Public

    novoStoic2.0: Integrated Pathway Design Tool with Thermodynamic Considerations and Enzyme Selection

    Jupyter Notebook 11 9

  6. KETCHUP KETCHUP Public

    Kinetic Estimation Tool Capturing Heterogeneous Datasets Using Pyomo (KETCHUP)

    Python 5 1

Repositories

Showing 10 of 48 repositories
  • k-sacce306 Public

    K-FIT kinetic models for Saccharomyces cerevisiae CEN.PK and BY4741

    maranasgroup/k-sacce306's past year of commit activity
    MATLAB 0 2 0 0 Updated Jul 30, 2026
  • CatPred Public

    Machine Learning models for in vitro enzyme kinetic parameter prediction

    maranasgroup/CatPred's past year of commit activity
    Python 96 MIT 30 5 1 Updated Jun 15, 2026
  • maranasgroup/auxotroph-design's past year of commit activity
    Python 1 0 0 0 Updated Apr 28, 2026
  • yeastsMFA Public

    Repository for yeasts MFA related files

    maranasgroup/yeastsMFA's past year of commit activity
    MATLAB 3 2 0 0 Updated Apr 15, 2026
  • MechFind Public
    maranasgroup/MechFind's past year of commit activity
    Jupyter Notebook 8 0 0 0 Updated Feb 17, 2026
  • KETCHUP Public

    Kinetic Estimation Tool Capturing Heterogeneous Datasets Using Pyomo (KETCHUP)

    maranasgroup/KETCHUP's past year of commit activity
    Python 5 1 1 0 Updated Jan 12, 2026
  • scRBA Public

    S. cerevisiae Resource Balance Analysis model

    maranasgroup/scRBA's past year of commit activity
    GAMS 2 MIT 4 0 0 Updated Dec 3, 2025
  • rtRBA Public

    Resource Balance Analysis model for Rhodotorula toruloides IFO0880

    maranasgroup/rtRBA's past year of commit activity
    HTML 2 MIT 1 0 0 Updated Dec 3, 2025
  • I_orientalis_organic_acids Public

    Simulations of _Issatchenkia orientalis_ producing organic acids

    maranasgroup/I_orientalis_organic_acids's past year of commit activity
    0 1 0 0 Updated Nov 10, 2025
  • chemo-enz Public

    Expanding chemical synthesis planning to explore chemo-enzymatic pathways using minimal transitions

    maranasgroup/chemo-enz's past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Aug 14, 2025