Emergent Epidemics Lab

All

23 repositories

world_bank_health_indicators
Public
Indicators for governance (2022) and health (2022) from the World Bank
MIT License
•0•0•0•0•Updated Oct 30, 2024Oct 30, 2024
H5N1_US2024_timeline
Public
Data associated with the timeline of events during the 2024 H5N1 outbreak in the United States
Other
•0•28•1•0•Updated Jul 17, 2024Jul 17, 2024
COVID_Mexico
Public
Analyses of COVID-19 data from Mexico
R
•
MIT License
•0•0•0•0•Updated May 28, 2024May 28, 2024
USDA_cattle_data
Public
R
•
MIT License
•0•0•0•0•Updated May 10, 2024May 10, 2024
wastewater_scan_analysis
Public
Analysis of wastewater scan pathogen surveillance data
R
•
MIT License
•0•0•0•0•Updated Mar 10, 2023Mar 10, 2023
pathogen_containment
Public
Analysis of outbreak extinction probabilities
R
•
MIT License
•0•0•0•0•Updated Jan 20, 2023Jan 20, 2023
MA_COVID_wastewater
Public
Plotting wastewater surveillance data for SARS-CoV-2 in MA
R
•
MIT License
•0•0•0•0•Updated Jan 11, 2023Jan 11, 2023
Ebola_SitReps_Uganda_2022
Public
Digitizing Ebola SitReps from Uganda
R
•
MIT License
•1•5•0•0•Updated Dec 17, 2022Dec 17, 2022
covid19_npi_china
Public
Code for: The effect of human mobility and control measures on the COVID-19 epidemic in China
python r open-data epidemiology covid-19
Jupyter Notebook
•
MIT License
•11•21•0•0•Updated Dec 1, 2022Dec 1, 2022
eeid_mobility
Public
Analysis of Baidu mobility data for EEID
R
•
MIT License
•2•1•0•0•Updated Jun 6, 2022Jun 6, 2022
ma_covid
Public
MA Dept. of Public Health data on COVID19
data r open-data epidemiology massachusetts epidemic-data covid-19
R
•
MIT License
•0•1•0•0•Updated Jan 13, 2021Jan 13, 2021
COVID_crowding
Public
Crowding and the shape of COVID-19 epidemics
r open-data epidemiology covid-19
R
•
MIT License
•1•5•0•0•Updated Oct 5, 2020Oct 5, 2020
COVID_Hong_Kong
Public
COVID data analysis from Hong Kong
data r open-data epidemiology covid-19
R
•
MIT License
•2•2•0•0•Updated Jul 28, 2020Jul 28, 2020
ca_covid
Public
California COVID data
data r california open-data epidemiology covid-19
R
•
MIT License
•0•0•0•0•Updated Jul 24, 2020Jul 24, 2020
influenza_surveillance_bias_texas
Public
Code and data for, "Socioeconomic bias in influenza surveillance"
data r public-health epidemiology influenza
MIT License
•0•0•0•0•Updated Jul 9, 2020Jul 9, 2020
beyond_R0
Public
Code and data for final epidemic size calculations
python r epidemiology network-analysis covid-19
R
•
MIT License
•0•6•0•0•Updated Apr 23, 2020Apr 23, 2020
US_influenza_data_1998_09-2019
Public
Data on US ILI, influenza pos lab tests, and total influenza cases from 1998-2019
r usa epidemiology influenza cdc-data
R
•
Other
•0•3•0•0•Updated Mar 8, 2020Mar 8, 2020
Emergent_Epidemics_Lab_nCoV2019
Public
An RShiny App for mapping nCoV2019 line list data
r rshiny mapbox leafletjs infectious-diseases ncov
R
•
MIT License
•4•9•0•0•Updated Feb 27, 2020Feb 27, 2020
statcomp
Public
R
•
MIT License
•0•0•0•0•Updated Aug 17, 2019Aug 17, 2019
infectious_disease_predictability
Public
Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri
r information-theory statistical-analysis infectious-diseases
TeX
•
Other
•8•17•0•0•Updated Aug 17, 2019Aug 17, 2019
Puerto_Rico_Arbovirus_Data
Public
Arbovirus and dengue data from Puerto Rico
data r public-health puerto-rico zika arboviruses dengue chikungunya filovirus san-juan-puerto-rico
R
•
MIT License
•1•8•0•0•Updated Mar 10, 2019Mar 10, 2019
NNDS_CDC_pneumococcal
Public
US state-level data from the CDC on invasive pneumococcal disease
R
•
MIT License
•0•0•0•0•Updated Jan 18, 2019Jan 18, 2019
VON_NICU_2018
Public
Code for The Interhospital Transfer Network for Very Low Birth Weight Infants in the United States
R
•
MIT License
•1•0•0•0•Updated Oct 12, 2018Oct 12, 2018