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    17 repositories

    • tf-isoforms-publication

      Public
      Data preprocessing and analysis for the study of alternative isoforms of human TFs
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 25, 2025Jan 25, 2025

    • TFBS

      Public
      TFBS perl module
      Perl
      •
      Other
      •3•6•0•1•Updated Jul 10, 2024Jul 10, 2024

    • CAGEr

      Public
      Mirror of Bioconductor's CAGEr package repository
      HTML
      •4•0•0•0•Updated May 14, 2024May 14, 2024

    • ChIPseeker

      Public
      🎯 ChIP peak Annotation, Comparison and Visualization
      R
      •77•0•0•0•Updated May 3, 2023May 3, 2023

    • seqArchR

      Public
      seqArchR: Identifying (promoter) sequence architectures de novo using NMF
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 9, 2023Mar 9, 2023

    • reproducible-seqArchR-manuscript

      Public
      Supporting files for seqArchR manuscript
      R
      •
      MIT License
      •1•0•0•0•Updated Mar 6, 2023Mar 6, 2023

    • human-tf-isoforms-thesis

      Public
      Genome-wide analysis of alternative isoforms of human TFs (Chapters 3, 4 and 5 of Sviatoslav Sidorov's PhD thesis)
      R
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Sep 15, 2022Sep 15, 2022

    • gyre-spanning-binding-thesis

      Public
      Search for gyre-spanning nucleosome binding of human TFs (Chapter 2 of Sviatoslav Sidorov's PhD thesis)
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 31, 2022Aug 31, 2022

    • human-tf-isoforms

      Public
      Analysis of alternative isoforms of human transcription factors
      Nextflow
      •
      MIT License
      •2•0•0•0•Updated Aug 14, 2022Aug 14, 2022

    • GenomicInteractions

      Public
      R/Bioconductor package for handling Genomic interaction data, annotating genomic features with interaction information and producing summary plots / statistics
      R
      •1•7•8•0•Updated Apr 8, 2022Apr 8, 2022

    • kurtosis_conservation

      Public
      Scripts for calculating kurtosis based conservation
      R
      •5•0•0•0•Updated Sep 10, 2018Sep 10, 2018

    • ZENCODE_Advanced_RNA-seq_training

      Public
      HTML
      •0•0•0•0•Updated Dec 1, 2017Dec 1, 2017

    • tad_cnes_harmston2017

      Public
      GNU Affero General Public License v3.0
      •3•3•0•0•Updated Nov 19, 2017Nov 19, 2017

    • TFBS-web

      Public
      TFBS website
      HTML
      •0•0•0•0•Updated Mar 7, 2017Mar 7, 2017

    • GenomicInteractions-old

      Public
      R/Bioconductor package for handling Genomic interaction data, annotating genomic features with interaction information and producing summary plots / statistics
      R
      •1•4•6•1•Updated Dec 16, 2016Dec 16, 2016

    • rtracklayer

      Public
      Fork of Bioconductor package rtracklayer for development.
      C
      •
      Other
      •0•0•0•0•Updated Apr 5, 2016Apr 5, 2016

    • gg_plotting

      Public
      R
      •0•0•0•0•Updated Dec 3, 2015Dec 3, 2015