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ComputationalRegulatoryGenomicsICL

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  1. GenomicInteractions GenomicInteractions Public

    R/Bioconductor package for handling Genomic interaction data, annotating genomic features with interaction information and producing summary plots / statistics

    R 7 1

  2. TFBS TFBS Public

    TFBS perl module

    Perl 6 3

  3. GenomicInteractions-old GenomicInteractions-old Public

    R/Bioconductor package for handling Genomic interaction data, annotating genomic features with interaction information and producing summary plots / statistics

    R 4 1

  4. tad_cnes_harmston2017 tad_cnes_harmston2017 Public

    3 3

  5. human-tf-isoforms-thesis human-tf-isoforms-thesis Public

    Genome-wide analysis of alternative isoforms of human TFs (Chapters 3, 4 and 5 of Sviatoslav Sidorov's PhD thesis)

    R 1

  6. TFBS-web TFBS-web Public

    TFBS website

    HTML

Repositories

Showing 10 of 17 repositories
  • tf-isoforms-publication Public

    Data preprocessing and analysis for the study of alternative isoforms of human TFs

    ComputationalRegulatoryGenomicsICL/tf-isoforms-publication’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jan 25, 2025
  • TFBS Public

    TFBS perl module

    ComputationalRegulatoryGenomicsICL/TFBS’s past year of commit activity
    Perl 6 3 0 1 Updated Jul 10, 2024
  • CAGEr Public Forked from charles-plessy/CAGEr

    Mirror of Bioconductor's CAGEr package repository

    ComputationalRegulatoryGenomicsICL/CAGEr’s past year of commit activity
    HTML 0 4 0 0 Updated May 14, 2024
  • ChIPseeker Public Forked from YuLab-SMU/ChIPseeker

    🎯 ChIP peak Annotation, Comparison and Visualization

    ComputationalRegulatoryGenomicsICL/ChIPseeker’s past year of commit activity
    R 0 77 0 0 Updated May 3, 2023
  • seqArchR Public Forked from snikumbh/seqArchR

    seqArchR: Identifying (promoter) sequence architectures de novo using NMF

    ComputationalRegulatoryGenomicsICL/seqArchR’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated Mar 9, 2023
  • reproducible-seqArchR-manuscript Public Forked from snikumbh/reproducible-seqArchR-manuscript

    Supporting files for seqArchR manuscript

    ComputationalRegulatoryGenomicsICL/reproducible-seqArchR-manuscript’s past year of commit activity
    R 0 MIT 1 0 0 Updated Mar 6, 2023
  • human-tf-isoforms-thesis Public

    Genome-wide analysis of alternative isoforms of human TFs (Chapters 3, 4 and 5 of Sviatoslav Sidorov's PhD thesis)

    ComputationalRegulatoryGenomicsICL/human-tf-isoforms-thesis’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Sep 15, 2022
  • gyre-spanning-binding-thesis Public

    Search for gyre-spanning nucleosome binding of human TFs (Chapter 2 of Sviatoslav Sidorov's PhD thesis)

    ComputationalRegulatoryGenomicsICL/gyre-spanning-binding-thesis’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 31, 2022
  • human-tf-isoforms Public Forked from sidorov-si/nextflow-example

    Analysis of alternative isoforms of human transcription factors

    ComputationalRegulatoryGenomicsICL/human-tf-isoforms’s past year of commit activity
    Nextflow 0 MIT 2 0 0 Updated Aug 14, 2022
  • GenomicInteractions Public

    R/Bioconductor package for handling Genomic interaction data, annotating genomic features with interaction information and producing summary plots / statistics

    ComputationalRegulatoryGenomicsICL/GenomicInteractions’s past year of commit activity
    R 7 1 8 0 Updated Apr 8, 2022
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