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    67 repositories

    • MuxVizPy

      Public
      A research toolkit for multiplex networks: build layer tensors & supra-adjacency, analyze topology and mesoscale with SBM, compute multilayer centralities, and visualize layers in 3D.
      Python
      •
      MIT License
      •3•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • .github

      Public
      0•0•0•0•Updated Oct 6, 2025Oct 6, 2025

    • structural_robustness

      Public
      A modular Python library to study the structural robustness of complex networks. It computes spectral-entropy metrics, entanglement-based node importance, and simulates centrality-driven dismantling while tracking the largest connected component. Includes correlation analysis, examples, and pytest tests.
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 6, 2025Oct 6, 2025

    • bioRC

      Public
      Synthetic network model and Reservoir Computing codes used in d'Andrea, Puppin, De Domenico "Complex topological features of reservoirs shape learning performances in bio-inspired recurrent neural networks"
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 30, 2025Sep 30, 2025

    • StochasticDynamics

      Public
      StochasticDynamics is an R package for simulating and visualizing stochastic processes on networks, including epidemic (SIR, SEIR, SIRS), opinion, and reaction–diffusion models. Provides incidence analysis, interactive 3D visualization with rgl, and video export tools.
      R
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      Other
      •0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

    • collectivedyn

      Public
      R package for simulating and analyzing collective dynamics of coupled systems on networks. Includes continuous-time ODEs (Lorenz, Rössler, Chua, Duffing, etc.), discrete maps (Logistic, Hénon, ARMA, Harmonic), Kuramoto and double-well models, with adaptive rewiring and visualization tools.
      R
      •
      Other
      •0•0•0•0•Updated Sep 25, 2025Sep 25, 2025

    • RobustnessProfiles

      Public
      Simulation and analysis of network robustness under node removal strategies. Includes standard centrality-based attacks and entanglement-based robustness using mutual information profiles. Provides tools to generate synthetic networks, compute robustness curves, and visualize critical thresholds.
      R
      •
      Other
      •0•0•0•0•Updated Sep 24, 2025Sep 24, 2025

    • LLM-Agents

      Public
      0•0•0•0•Updated Sep 24, 2025Sep 24, 2025

    • SpectralEntropyLib

      Public
      R package providing information-theoretic tools for complex networks via spectral entropies and divergences. Implements von Neumann and Rényi entropies, Jensen–Shannon and Kullback–Leibler divergences, spectral gap and density-matrix based measures, enabling network comparison, profiling, and inference.
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 24, 2025Sep 24, 2025

    • SpectralGeometryLib

      Public
      SpectralGeometry is an R package for spectral analysis of complex networks. It computes Laplacians (combinatorial, random-walk, symmetric), eigen-spectra, heat kernels, diffusion distances, and low-dimensional embeddings, plus metrics for partitions and multilayer graphs.
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 24, 2025Sep 24, 2025

    • MultiNetLib

      Public
      Tools for multilayer / multiplex network analysis originally developed for muxViz, ported from MATLAB to R and extended over time
      R
      •
      Other
      •0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

    • NetGrowLib

      Public
      NetGrowLib is an R package providing a collection of network growth models and tools for analyzing their degree distributions. It implements classical models (Barabási–Albert, CHKNS, age-biased “Darknet”) as well as exploratory clustered variants, with utilities for log/linear binning, empirical degree distributions, and visualization.
      R
      •
      Other
      •0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

    • seir_deniers

      Public
      SEIR-deniers simulates epidemic spreading with behavioral heterogeneity, modeling Deniers and Cooperators in a compartmental SEIR framework. Includes both network-based Gillespie simulations and mean-field ODE integration.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

    • perturbnet

      Public
      Python library to analyze how perturbations propagate on networks using steady-state ODE models, Local/Global correlation matrices, temporal distances, and clean visuals.
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 23, 2025Sep 23, 2025

    • infodemap

      Public
      Python package for mapping the Infodemic Risk Index (IRI) across global regions using geospatial data and COVID-19 infodemic indicators. Includes scripts to generate maps for the world, Europe/Italy, and the USA.
      HTML
      •
      MIT License
      •0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

    • functional_robustness

      Public
      Tools to simulate and compare network dismantling strategies, degree, betweenness, PageRank, and entropy-based entanglement, tracking spectral/Laplacian metrics to quantify functional robustness under targeted attacks.
      Python
      •
      MIT License
      •0•1•0•0•Updated Sep 22, 2025Sep 22, 2025

    • forecasting

      Public
      A modular Python library for time series forecasting with SARIMAX, symbolic entropy rate estimation via Lempel-Ziv methods, and geospatial analysis using the haversine distance. Includes support for endogenous weekly patterns, exogenous drivers, and flexible data preprocessing.
      Python
      •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • embedding-dim

      Public
      Analyze time series complexity using symbolic dynamics, entropy rates, redundancy, and predictability across time-delay embeddings.
      Python
      •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • ndm

      Public
      Generalized Network Diffusion Model — a physics-inspired framework to model diffusion on complex networks and analyze its informational and thermodynamic structure.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • jacobian_geometry

      Public
      A Python library to explore how network-driven dynamics induce mesoscale organization through Jacobian and diffusion-based functional geometry.
      Python
      •
      MIT License
      •0•2•0•0•Updated Sep 22, 2025Sep 22, 2025

    • FERM_python

      Public
      Code to run the Feature-Enriched Radiation Model (FERM) on Python, including parallel computing
      HTML
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • oad

      Public
      Python library to simulate Operational–Affected–Disrupted cascades via an optimized Gillespie algorithm on NetworkX graphs; outputs survivors and GCC statistics.
      Python
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2025Sep 22, 2025

    • Human-Microbiome-Multiplex-Network

      Public
      18-layer undirected microbial interaction networks across human body sites.
      Other
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • FAO-Multiplex-Trade-Network

      Public
      364-layer directed weighted food trade multiplex among countries (each layer a product; year 2010).
      Other
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • Pierre-Auger-Multiplex

      Public
      16-layer undirected weighted coauthorship multiplex within the Pierre Auger Collaboration (2010–2012).
      Other
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • arXiv-Network-Science-Multiplex

      Public
      13-layer undirected weighted coauthorship multiplex for arXiv papers on “networks” across subfields.
      Other
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • Yeast-Landscape-Multiplex

      Public
      Four-layer multiplex combining genetic interactions and correlation-based profiles in S. cerevisiae.
      Other
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • Xenopus-Multiplex

      Public
      Five-layer BioGRID genetic/protein interaction multiplex for Xenopus laevis.
      Other
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • Schizosaccharomyces-pombe

      Public
      Seven-layer BioGRID genetic/protein interaction multiplex for S. pombe.
      Other
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025

    • Saccharomyces-cerevisiae-Multiplex

      Public
      Seven-layer BioGRID genetic/protein interaction multiplex for S. cerevisiae.
      Other
      •0•0•0•0•Updated Aug 29, 2025Aug 29, 2025