Update Denoising results #1185
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| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| name: Render project | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build-deploy: | |
| runs-on: ubuntu-latest | |
| env: | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| NETLIFY_SITE_ID: 397b6416-708f-4133-afe9-9a07ed2e03bf | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: "4.3" | |
| use-public-rspm: true | |
| - name: Install system dependencies for igraph | |
| run: sudo apt-get update && sudo apt-get install -y libglpk40 | |
| - name: Set up environment | |
| run: | | |
| echo "LINUX_VERSION=$(uname -rs)" >> $GITHUB_ENV | |
| - name: Cache Python packages | |
| uses: actions/cache@v4 | |
| with: | |
| path: renv/python/virtualenvs/renv-python-3.10 | |
| key: python-${{env.LINUX_VERSION}}-${{ env.pythonLocation }}-${{ hashFiles('requirements.txt') }} | |
| restore-keys: python-${{env.LINUX_VERSION}}-${{ env.pythonLocation }}- | |
| - uses: r-lib/actions/setup-renv@v2 | |
| - uses: viash-io/viash-actions/setup@v6 | |
| - name: Install Quarto | |
| uses: quarto-dev/quarto-actions/setup@v2 | |
| with: | |
| version: 1.5.57 | |
| - name: If PR, cache several directories | |
| if: github.event_name == 'pull_request' | |
| uses: actions/cache@v4 | |
| with: | |
| key: quarto-${{ github.ref_name }} | |
| restore-keys: quarto | |
| path: | | |
| .quarto | |
| _site | |
| _freeze | |
| - name: Render with Quarto | |
| shell: bash -l {0} | |
| run: | | |
| quarto render --profile evaluate_code | |
| ## push actions | |
| - name: Deploy push | |
| uses: data-intuitive/netlify-deploy-site@v1 | |
| if: github.event_name == 'push' | |
| with: | |
| auth: ${{ secrets.NETLIFY_AUTH_TOKEN }} | |
| site: ${{ env.NETLIFY_SITE_ID }} | |
| dir: '_site' | |
| alias: "main" | |
| message: 'Deploy main ${{ github.ref }}' | |
| ## release actions | |
| - name: Deploy release to Netlify 🚀 | |
| uses: data-intuitive/netlify-deploy-site@v1 | |
| if: github.event_name == 'push' | |
| with: | |
| auth: ${{ secrets.NETLIFY_AUTH_TOKEN }} | |
| site: ${{ env.NETLIFY_SITE_ID }} | |
| dir: '_site' | |
| prod: true | |
| message: 'Deploy production ${{ github.ref }}' | |
| ## PR actions | |
| - name: Deploy preview | |
| id: deploy_preview | |
| if: github.event_name == 'pull_request' | |
| uses: data-intuitive/netlify-deploy-site@v1 | |
| with: | |
| auth: ${{ secrets.NETLIFY_AUTH_TOKEN }} | |
| site: ${{ env.NETLIFY_SITE_ID }} | |
| dir: '_site' | |
| alias: "${{ env.BRANCH_NAME }}" | |
| message: 'Deploy preview ${{ github.ref }}' | |
| - name: Comment on PR (success) | |
| uses: thollander/actions-comment-pull-request@v2 | |
| if: github.event_name == 'pull_request' | |
| with: | |
| message: | | |
| [](${{ steps.deploy_preview.outputs.deploy-url }}) | |
| comment_tag: deploy_status | |
| - name: Comment on PR (deploy failure) | |
| uses: thollander/actions-comment-pull-request@v2 | |
| if: github.event_name == 'pull_request' && failure() && steps.deploy_preview.outcome == 'failure' | |
| with: | |
| message: | | |
| [](${{ steps.deploy_preview.outputs.logs }}) | |
| comment_tag: deploy_status | |
| - name: Comment on PR (actions failure) | |
| uses: thollander/actions-comment-pull-request@v2 | |
| if: github.event_name == 'pull_request' && failure() && steps.deploy_preview.outcome != 'failure' | |
| with: | |
| message: | | |
| [](https://github.com/${{github.repository}}/actions/runs/${{github.run_id}}/jobs/${{github.job}}) | |
| comment_tag: deploy_status | |