Skip to content
@openproblems-bio

Open Problems in Single-Cell Analysis

Pinned Loading

  1. openproblems openproblems Public

    Formalizing and benchmarking open problems in single-cell genomics

    Shell 322 81

  2. website website Public

    Website hosted at https://openproblems.bio

    TeX 3 7

Repositories

Showing 10 of 34 repositories
  • task_grn_inference Public
    openproblems-bio/task_grn_inference’s past year of commit activity
    Jupyter Notebook 3 1 0 0 Updated Dec 23, 2024
  • task_ist_preprocessing Public
    openproblems-bio/task_ist_preprocessing’s past year of commit activity
    Python 4 MIT 0 1 1 Updated Dec 23, 2024
  • task_cyto_batch_integration Public
    openproblems-bio/task_cyto_batch_integration’s past year of commit activity
    Shell 1 MIT 1 1 0 Updated Dec 21, 2024
  • task_batch_integration Public
    openproblems-bio/task_batch_integration’s past year of commit activity
    Python 1 MIT 2 3 3 Updated Dec 20, 2024
  • task_dimensionality_reduction Public
    openproblems-bio/task_dimensionality_reduction’s past year of commit activity
    Python 0 MIT 1 5 0 Updated Dec 20, 2024
  • task_label_projection Public

    Automated cell type annotation from rich, labeled reference data

    openproblems-bio/task_label_projection’s past year of commit activity
    Python 0 MIT 0 1 5 Updated Dec 20, 2024
  • website Public

    Website hosted at https://openproblems.bio

    openproblems-bio/website’s past year of commit activity
    TeX 3 CC-BY-4.0 7 32 (1 issue needs help) 14 Updated Dec 19, 2024
  • task_perturbation_prediction Public

    A benchmark on predicting how small molecules change gene expression in different cell types.

    openproblems-bio/task_perturbation_prediction’s past year of commit activity
    Python 3 MIT 2 5 3 Updated Dec 19, 2024
  • task_denoising Public

    Removing noise in sparse single-cell RNA-sequencing count data

    openproblems-bio/task_denoising’s past year of commit activity
    Python 0 MIT 0 1 0 Updated Dec 19, 2024
  • nbt2023-manuscript Public
    openproblems-bio/nbt2023-manuscript’s past year of commit activity
    R 1 0 0 0 Updated Dec 19, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…