Merge pull request #8 from openproblems-bio/feature/issue-4/sc-deprec…

…ation Fix target_sum deprecation warning
openproblems-bio · Jul 5, 2024 · 6867a4c · 6867a4c
2 parents 1c1d064 + 67fe4c8
commit 6867a4c
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -14,6 +14,7 @@
 
 * Remove dtype parameter in `.Anndata()` (PR #6).
 
+* Fix target_sum deprecation warning in `mse` mmetric (PR #8).
 
 ## transfer from openproblems-v2 repository
 

diff --git a/src/metrics/mse/script.py b/src/metrics/mse/script.py
@@ -29,7 +29,7 @@
 sc.pp.normalize_total(test_data, target_sum=target_sum)
 sc.pp.log1p(test_data)
 
-sc.pp.normalize_total(denoised_data, target_sum)
+sc.pp.normalize_total(denoised_data, target_sum=target_sum)
 sc.pp.log1p(denoised_data)
 
 print("Compute mse value", flush=True)
Original file line number	Diff line number	Diff line change
Expand Up		@@ -14,6 +14,7 @@

		* Remove dtype parameter in `.Anndata()` (PR #6).

		* Fix target_sum deprecation warning in `mse` mmetric (PR #8).

		## transfer from openproblems-v2 repository

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