Replace "+" in batch names for liger (#37)

openproblems-bio · Jan 20, 2025 · bdeaaaf · bdeaaaf
1 parent 2a64a4f
commit bdeaaaf
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/src/methods/liger/script.R b/src/methods/liger/script.R
@@ -14,6 +14,7 @@ meta <- list(
 
 cat("Read input\n")
 adata <- anndata::read_h5ad(par$input)
+adata$obs["batch"] <- sub("\\+", "plus", adata$obs[["batch"]]) # Replace "+"" characters in batch names
 
 anndataToLiger <- function(adata) {
   # fetch batch names