SER_phase_common

[elzadgeorge]

I performed phasing for mom-child duos (N=2326) using phase_common. After the switch step, I calculated the Switch Error Rate (SER) and found it to be around 0.51-0.91 across chromosomes 1-22. Could the high SER be due to using duos instead of trios? Are there any suggestions on how to reduce the error rate?