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SER_phase_common

Status: Open.

#118 In odelaneau/shapeit5;

· elzadgeorge opened on Mar 18, 2025

Core Dump Issue during Rare Phasing

Status: Open.

#117 In odelaneau/shapeit5;

· ChrisCarson27 opened on Mar 14, 2025

ERROR: Haploid underflow impossible to recover

Status: Open.

#116 In odelaneau/shapeit5;

· sadafrf opened on Feb 3, 2025

Outdated path file in tutorial

Status: Open.

#115 In odelaneau/shapeit5;

· lcsfaria opened on Jan 21, 2025

What is the cause of the problem Assertion `rdp == (ind_number[file]*2 failed when using phase_common_static?

Status: Open.

#114 In odelaneau/shapeit5;

· thierrygrange opened on Dec 28, 2024

shapeit5 for Structural Variations

Status: Open.

#111 In odelaneau/shapeit5;

· Zuyan4 opened on Sep 17, 2024

No static binaries for Linux/RHEL found in the download links

Status: Open.

#110 In odelaneau/shapeit5;

· Toseph opened on Aug 29, 2024

phase_common sometimes creates Mendelian errors for missing genotypes when phasing with --pedigree

Status: Open.

#109 In odelaneau/shapeit5;

· kkellysci opened on Aug 23, 2024

ligate won't treat offspring as scaffolded unless parents are still in data

Status: Open.

#108 In odelaneau/shapeit5;

· kkellysci opened on Aug 22, 2024

[QUESTION] Partially phased VCF as input

Status: Open.

#106 In odelaneau/shapeit5;

· davidyuyuan opened on Jul 20, 2024

about merging multiallelics

Status: Open.

#104 In odelaneau/shapeit5;

· vicbp1 opened on Jun 19, 2024

vcf_to_sparse.py location for compound het detection

Status: Open.

#103 In odelaneau/shapeit5;

· Naughtoncolin opened on Jun 11, 2024