5.0.0

Java 21 and brand new UI: see release notes https://www.obiba.org/pages/news/release/opal/5.0/

What's Changed

• SQL API added by @ymarcon in #3619
• Bump xstream from 1.4.15 to 1.4.16 by @dependabot in #3615
• Bump commons-io from 2.4 to 2.7 by @dependabot in #3624
• unzip zip archive by @meek0 in #3632
• Bump xstream from 1.4.16 to 1.4.17 by @dependabot in #3635
• Bump httpclient from 4.5 to 4.5.13 by @dependabot in #3639
• DataSHIELD/R server profiles by @ymarcon in #3648
• update mongo driver to 3.12 by @meek0 in #3649
• Fix for RPM in CentOS by @mennodekker in #3664
• Do not use hardcoded port number by @kazoompa in #3683
• Use config server port number by @kazoompa in #3684
• #3674 filters should check localeTextDto values by @meek0 in #3686
• Bump xstream from 1.4.17 to 1.4.18 by @dependabot in #3670
• Bump xstream from 1.4.18 to 1.4.19 by @dependabot in #3695
• Two-factor authentication mechanism added by @ymarcon in #3711
• Bump json-smart from 2.3 to 2.3.1 by @dependabot in #3712
• Bump logback-core from 1.2.3 to 1.2.9 by @dependabot in #3713
• Bump gson from 2.3.1 to 2.8.9 by @dependabot in #3731
• Bump postgresql from 42.5.0 to 42.5.1 by @dependabot in #3768
• Bump commons-fileupload from 1.3.3 to 1.5 by @dependabot in #3783
• Bump spring-core from 5.3.26 to 5.3.27 by @dependabot in #3792
• DataSHIELD activity logging by @ymarcon in #3794
• feat: CORS filter added, to support alternate gui by @ymarcon in #3819
• Bump org.json:json from 20230227 to 20231013 by @dependabot in #3823
• feat: upgrade to Java 21, spring 6 and more by @ymarcon in #3828
• build(deps): bump org.springframework:spring-web from 6.0.18 to 6.0.19 by @dependabot in #3830
• build(deps): bump org.bouncycastle:bcpkix-jdk18on from 1.76 to 1.78 by @dependabot in #3847
• build(deps): bump org.bouncycastle:bcprov-jdk18on from 1.76 to 1.78 by @dependabot in #3831
• feat: added bookmarks for project and table pages, refactored landing page by @ymarcon in #3850
• feat: add/edit/delete/order categories by @ymarcon in #3852
• Feature/admin data access by @kazoompa in #3851
• Added select and chips to beautify users/groups by @kazoompa in #3853
• fix: no eslint warnings, ensure UI/UX consistency by @ymarcon in #3854
• Feature/admin user profiles (wip) by @kazoompa in #3859
• Added permissions page (wip) by @kazoompa in #3860
• Feature/admin user profiles by @kazoompa in #3861
• feat(ui): add view of variables by @ymarcon in #3863
• feat(ui): add variables to a view and other variable edition acitons by @ymarcon in #3864
• Feature/identity providers by @kazoompa in #3865
• feat(ui): user profile by @kazoompa in #3866
• feat(ui): variable annotations managenent by @ymarcon in #3867
• Changed the breadcrumb and file names by @kazoompa in #3868
• feat(ui): edit annotation free text in multiple languages by @ymarcon in #3869
• feat(ui): variable attributes and annotations by @ymarcon in #3870
• When filtering, terms table shows edit/del by @kazoompa in #3872
• Added project permissions page by @kazoompa in #3873
• View/Report permissions fixed by @kazoompa in #3874
• feat(ui): Resources by @ymarcon in #3875
• Started the Add Project dialog by @kazoompa in #3876
• feat: resource actions according to permissions by @ymarcon in #3877
• Converted BaseResource to an abstract class by @kazoompa in #3878
• feat: resource views creation, display and deletion by @ymarcon in #3879
• fix: revert transactional by @kazoompa in #3880
• Feature/project admin by @kazoompa in #3881
• Improve/project admin keys by @kazoompa in #3882
• Feature/admin apps by @kazoompa in #3883
• Added VCF to project admin page by @kazoompa in #3884
• build(deps-dev): bump braces from 3.0.2 to 3.0.3 in /opal-ui by @dependabot in #3857
• feat(ui): add edit reload resource view #3840 by @ymarcon in #3886
• feat(ui): add or update variables, apply or delete annotations in batch, filter items #3837 by @ymarcon in #3888
• feat(ui): sql queries and history ui by @ymarcon in #3889
• feat: contingency table and service (using SQL when no search engine) #3838 by @ymarcon in #3890
• build(deps): bump axios from 1.6.7 to 1.7.4 in /opal-ui by @dependabot in #3891
• feat: edit where script of views #3838 by @ymarcon in #3892
• feat: refactoring search service (wip) #3893 by @ymarcon in #3894
• feat: index variables in lucene, execute search and display results by @ymarcon in #3895
• feat: n-gram analyzer added by @ymarcon in #3896
• feat: remove table variables from index on table/variable update, add… by @ymarcon in #3897
• feat: search pages added, index entity identifiers by @ymarcon in #3898
• feat: search variables page by @ymarcon in #3899
• Feature/project vcf by @kazoompa in #3902
• feat: table index scheduling, values index cleaning #3893 by @ymarcon in #3904
• feat: import/export from/to declared databases by @ymarcon in #3905
• feat(ui): extract zip file in a destination folder #3836 by @ymarcon in #3909
• feat: upgrade to opal 5.0 #3907 by @ymarcon in #3910
• feat: added tables index, not used for query (for now) #3901 by @ymarcon in #3911
• feat(ui): identifiers mappings by @kazoompa in #3912
• fix: identifiers by @kazoompa in #3914
• Improvement/import with id mapping by @kazoompa in #3916
• Fixed the driver <=> url change bug by @kazoompa in #3918
• feat: plugins administration page added by @ymarcon in #3919
• excluded OrientDB fasterxml deps by @kazoompa in #3920
• feat: rest client updated to use httpclient5 #3921 by @ymarcon in #3922
• feat: reporting feature removed #3923 by @ymarcon in #3924
• feat(ui): cart of variables added by @ymarcon in #3925
• chore: removed dependency over quartz and hsqldb because report sched… by @ymarcon in #3926
• feat: make opal contingency service compatible with legacy mica5 by @ymarcon in #3927
• build(deps): bump org.springframework:spring-webmvc from 6.1.8 to 6.1.13 by @dependabot in #3928
• build(deps): bump com.google.protobuf:protobuf-java from 3.24.3 to 3.25.5 by @dependabot in #3931
• feat: R cache is encrypted by @ymarcon in #3932
• feat: removed RQL parser, as it was not used anymore by @ymarcon in #3933
• Disable moving and editing terms when taxos are R/O by @kazoompa in #3935
• Feature/analyze validation by @kazoompa in #3938
• feat(ui): show user R activity by @ymarcon in #3939
• feat: set a tmp secret when 2FA is enforced by @ymarcon in #3941

New Contributors

• @mennodekker made their first contribution in #3664

Full Changelog: 4.0.3...5.0.0