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Separate Pipeline type inference/checking & MRC pipeline construction #1233

Merged
merged 187 commits into from
Oct 19, 2023
Merged

Separate Pipeline type inference/checking & MRC pipeline construction #1233

merged 187 commits into from
Oct 19, 2023

Commits on Aug 1, 2023

  1. wip

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  2. Don't hold a reference to the pipeline outside of the build method, e… 

    …xplicitly release reference to the executor after join and stop
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  3. Test for issue nv-morpheus#1114

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Commits on Aug 2, 2023

  1. Rename log parsing test to not conflict with top-level test_pipe

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  2. Pylint fixes

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  3. Don't hold a ref to executor options:

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  4. Skip test_multi_segment_bad_data_type due to MRC issue nv-morpheus/MR… 

    …C#360
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  5. lint fixes

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Commits on Aug 4, 2023

  1. Merge branch 'branch-23.11' into david-destructors-1114

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Commits on Aug 15, 2023

  1. Ensure that both _storage_dir and _storage_type are defined prior to … 

    …potentially raising an exception, this prevents an attribute error in the destructor
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  2. wip

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  3. Revert "wip" 

    This reverts commit e949da1.
    @dagardner-nv
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  4. Add comment explaining

    @dagardner-nv
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  5. Call PyGILState_Check first to see if we need to gil, borrowed from M… 

    …RC's PyObjectWrapper
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  6. Add comment explaining the call to PyGILState_Check

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Commits on Aug 17, 2023

  1. Test for MRC 362

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  2. Insert CR header, and add fixture for disabling garbage collection

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  3. Revert "Add comment explaining the call to PyGILState_Check" 

    This reverts commit 0f7500c.
    @dagardner-nv
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  4. Revert "Call PyGILState_Check first to see if we need to gil, borrowe… 

    …d from MRC's PyObjectWrapper"

This reverts commit 7394f23.
    @dagardner-nv
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Commits on Aug 18, 2023

  1. Adopt patched pybind11

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  2. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-destructors-1114
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  3. Lint fixes

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Commits on Aug 22, 2023

  1. Merge branch 'branch-23.11' into david-destructors-1114

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Commits on Aug 24, 2023

  1. Merge branch 'branch-23.11' into david-destructors-1114

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  2. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-destructors-1114
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Commits on Aug 29, 2023

  1. Merge branch 'branch-23.11' into david-pipe-build-refactor

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  2. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-pipe-build-refactor
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Commits on Aug 30, 2023

  1. wip

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  2. Ditch the mixin, as sources don't have parent types

    @dagardner-nv
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  3. Add output_type method to sources

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Commits on Aug 31, 2023

  1. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-pipe-build-refactor
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  2. Mixin for stages which explicitly receive & emit the same type

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  3. Remove unused imports

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  4. Add an inferred mixin for stages like monitor & trigger

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  5. Helper class to detect union types

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  6. WIP

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  7. WIP

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  8. WIP

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  9. WIP

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  10. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-pipe-build-refactor
    @dagardner-nv
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  11. Define output types for test stages

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  12. Move InMemSourceXStage to its own module to make it easier to find/re… 

    …used
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  13. WIP

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  14. CR headers

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  15. wip: 489 tests passing

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  16. wip, 508 tests passing

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  17. WIP: 1508 tests passing

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  18. WIP: 1519 tests passing

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  19. Set output types for dfp stages, 1706 tests passing

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  20. WIP: 1946 tests passing

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  21. All tests now passing

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  22. wip

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  23. Add test to ensure we aren't narrowing types

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  24. Simplify things a bit

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Commits on Sep 1, 2023

  1. WIP: First attempt at separating the build - untested

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  2. WIP

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  3. WIP

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Commits on Sep 5, 2023

  1. Fix node/type linking in receiver

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  2. If the pipeline failed any pre-flight checks self._mrc_executor will … 

    …be None
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  3. Fix clash between attribute and function

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  4. Fix types for log parsing pipeline

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  5. Raise when mrc_executor is None

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  6. Add types to stages

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  7. WIP

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  8. WIP

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  9. WIP

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  10. WIP

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  11. WIP

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  12. WIP

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  13. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-pipe-build-refactor [no ci]
    @dagardner-nv
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  14. Fix imports

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  15. Lint fixes [no ci]

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  16. Move pass_thru.py back [no ci]

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  17. Linting fixes [no ci]

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  18. Linting fixes [no ci]

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  19. Linting fixes [no ci]

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  20. Linting fixes [no ci]

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Commits on Sep 6, 2023

  1. Test to ensure we can viz without running (currently not passing) [no… 

    … ci]
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  2. Visualize no longer requires a full build [no ci]

    @dagardner-nv
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  3. Verify that we can run after vizualizing [no ci]

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  4. Vizualize prior to running, allowing the viz file to be generated eve… 

    …n if the pipeline fails [no ci]
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Commits on Sep 8, 2023

  1. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-pipe-build-refactor
    @dagardner-nv
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  2. Add output_type method to RSSSourceStage [no ci]

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  3. isort formatting fix

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  4. formatting [no ci]

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  5. WIP: Stop using streampair in build. TODO: 1) Update *EVERY* _build_s… 

    …ingle 2) Update _post_build
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  6. WIP: Stop using streampair in _post_build. TODO: 1) Update *EVERY* _b… 

    …uild_single 2) Updatge _post_build_single
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  7. WIP: Stop using streampair in _post_build_single. TODO: 1) Update *EV… 

    …ERY* _build_single & _build_source 2) Test benchmarks & changes to StaticMessageSource
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  8. WIP: Stop using streampair in _build_source. TODO: 1) Update *EVERY* … 

    …_build_single 2) Test benchmarks & changes to StaticMessageSource 3) Fix _bould_sources
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Commits on Sep 9, 2023

  1. SourceStage support multiple outputs . TODO: 1) Update *EVERY* _build… 

    …_single 2) Test benchmarks & changes to StaticMessageSource [no ci]
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Commits on Sep 11, 2023

  1. WIP: Update _build_single, TODO: 1) fix filter_detections_stage, 2) T… 

    …est benchmarks & changes to StaticMessageSource [no ci]
    @dagardner-nv
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  2. WIP: fix filter_detections_stage, TODO: 1) remove streampair, 2) Test… 

    … benchmarks & changes to StaticMessageSource [no ci]
    @dagardner-nv
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  3. Remove import [no ci]

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  4. Remove blank lines [no ci]

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  5. Remove streampair imports [no ci]

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  6. No more streampair [no ci]

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  7. Fix undefined node [no ci]

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  8. Fix return type [no ci]

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  9. Fix pre-build check [no ci]

    @dagardner-nv
    dagardner-nv committed Sep 11, 2023
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  10. Remove unused imports [no ci]

    @dagardner-nv
    dagardner-nv committed Sep 11, 2023
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  11. Add output_type [no ci]

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Commits on Sep 12, 2023

  1. Update feature length to match value used in tests/test_abp.py

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  2. Remove TODO as I have tested/verified benchmarks [no ci]

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  3. Update morpheus/pipeline/receiver.py 

    Co-authored-by: Christopher Harris <xixonia@gmail.com>
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  4. Remove unused property method [no ci]

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  5. Remove unused property method [no ci]

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  6. Update morpheus/pipeline/receiver.py 

    [no ci]

Co-authored-by: Christopher Harris <xixonia@gmail.com>
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  7. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-pipe-build-refactor
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  8. Merge branch 'david-pipe-build-refactor' of github.com:dagardner-nv/M… 

    …orpheus into david-pipe-build-refactor [no ci]
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  9. Update morpheus/pipeline/receiver.py 

    [no ci]

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  10. Method returns plural nodes

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  11. Fix type-o [no ci]

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  12. Limit the number of loops over the segment_graph are required [no ci]

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  13. Assert that the pipeline isn't changed after it has been built or pre… 

    …-built [no ci]
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  14. cleanups [no ci]

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  15. Update morpheus/pipeline/stream_wrapper.py 

    [no ci]

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  16. Update morpheus/pipeline/stream_wrapper.py 

    [no ci]

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  17. Update morpheus/pipeline/stream_wrapper.py 

    [no ci]

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  18. Update morpheus/pipeline/stream_wrapper.py 

    [no ci]

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  19. Merge branch 'david-pipe-build-refactor' of github.com:dagardner-nv/M… 

    …orpheus into david-pipe-build-refactor
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  20. cleanups [no ci]

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Commits on Sep 13, 2023

  1. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-pipe-build-refactor [no ci]
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  2. Pipeline.pre_build should not be user facing [no ci]

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  3. WIP: only call on_start for stages in the current segment [no ci]

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  4. Move calling on_start to start_async, and remove the definition of on… 

    …_start [no ci]
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Commits on Sep 14, 2023

  1. Call async_start only on stages in active segments. TODO: this breaks… 

    … tests that use asyncio [no ci]
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Commits on Sep 18, 2023

  1. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-pipe-build-refactor
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Commits on Sep 19, 2023

  1. fix calling awaitable coroutine [no ci]

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  2. Set _is_started and use asyncio.run [no ci]

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  3. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-pipe-build-refactor
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  4. Update WriteToElasticsearchStage to new api [no ci]

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  5. Lint fixes [no ci]

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    dagardner-nv committed Sep 19, 2023
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Commits on Sep 20, 2023

  1. Propagate pre-builds similar to the way builds are propagated. [no ci]

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Commits on Sep 21, 2023

  1. Replace /workspace paths with MORPHEUS_ROOT env var, break up long li… 

    …ne for readability [no ci]
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  2. Fix path to bert vocab file, add missing filter stage, fix line break… 

    …s [no ci]
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Commits on Sep 27, 2023

  1. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-pipe-build-refactor [no ci]
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  2. Fix merge errors [no ci]

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    dagardner-nv committed Sep 27, 2023
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Commits on Sep 29, 2023

  1. wip

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  2. wip

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  3. First pass at PortSchema and StageSchema classes

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  4. Single port helpers

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  5. wip

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  6. WIP

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Commits on Oct 2, 2023

  1. docstrings

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  2. WIP

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  3. consolidate input schema logic

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  4. WIP

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  5. WIP

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  6. Update the pass-thru-mixin

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  7. Replace output_type with compute_schema

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  8. Fixing type-os

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  9. Fix type-os for viz

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  10. Temporarily skip failing test DO NOT MERGE

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  11. Revert "Temporarily skip failing test DO NOT MERGE" 

    This reverts commit 3ff29d3.
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  12. Complete port schemas produced on the fly by the receiver

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  13. Lint fixes [no ci]

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Commits on Oct 5, 2023

  1. Rename StreamWrapper to BaseStage to reflect that we are no longer us… 

    …ing cuStreamz [no ci]
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  2. WIP: [no ci]

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  3. WIP: [no ci]

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  4. Indicate that the as_shared_pointer parameter is unused [no ci]

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  5. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-pipe-build-refactor-stage-schema
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  6. Update deltalake stages to support stage schemas [no ci]

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  7. Remove unused import [no ci]

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  8. Allow test to run in both Python & C++ mode [no ci]

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  9. Mark the complete method as private [no ci]

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  10. Tests for PortSchema [no ci]

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Commits on Oct 6, 2023

  1. WIP tests: [no ci]

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  2. WIP [no ci]

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  3. First pass at some mult-port stages for testing [no ci]

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  4. WIP [no ci]

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  5. WIP tests [no ci]

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  6. Move pipeline tests into tests/pipeline

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  7. Assert that when stages are passed into the add_edge method they only… 

    … have a single port [no ci]
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  8. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-pipe-build-refactor-stage-schema [no ci]
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  9. Remove unused imports [no ci]

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Commits on Oct 9, 2023

  1. Remove TODO comment, will resolve docs in separate PR

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  2. Ignore pylint warning

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    dagardner-nv committed Oct 9, 2023
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  3. Fix import sorting

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    dagardner-nv committed Oct 9, 2023
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Commits on Oct 11, 2023

  1. Merge branch 'branch-23.11' into david-pipe-build-refactor-stage-schema

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  2. Revert unintentional change

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Commits on Oct 19, 2023

  1. WIP: Rename BaseStage to StageBase

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  2. WIP: Rename BaseStage to StageBase

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  3. WIP: Rename BaseStage to StageBase

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  4. Merge branch 'branch-23.11' of github.com:nv-morpheus/Morpheus into d… 

    …avid-pipe-build-refactor-stage-schema
    @dagardner-nv
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  5. Update WriteToVectorDBStage

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  6. Fix import order

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    dagardner-nv committed Oct 19, 2023
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  7. Fix import order

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    dagardner-nv committed Oct 19, 2023
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