[Snyk] Security upgrade urllib3 from 2.2.3 to 2.6.0

[nn6n]

Snyk has created this PR to fix 2 vulnerabilities in the pip dependencies of this project.

Snyk changed the following file(s):

• requires-optional.txt

⚠️ Warning

otebook 6.5.7 requires pyzmq, which is not installed.
jupyter-server 1.24.0 requires pyzmq, which is not installed.
jupyter-console 6.6.3 requires pyzmq, which is not installed.
jupyter-client 7.4.9 requires pyzmq, which is not installed.
ipykernel 6.16.2 requires pyzmq, which is not installed.
geopandas 0.10.2 requires pyproj, which is not installed.

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• Some vulnerabilities couldn't be fully fixed and so Snyk will still find them when the project is tested again. This may be because the vulnerability existed within more than one direct dependency, but not all of the affected dependencies could be upgraded.

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[gemini-code-assist]

Summary of Changes

Hello @nn6n, I'm Gemini Code Assist¹! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request addresses critical security vulnerabilities by upgrading the urllib3 dependency to version 2.6.0. The change, automatically generated by Snyk, updates the version constraint in requires-optional.txt to ensure the project utilizes a more secure and stable release of the library, thereby enhancing overall project security.

Highlights

• Security Upgrade: Upgraded the urllib3 dependency from version 2.2.3 to 2.6.0 to address two identified security vulnerabilities.
• Automated Fix: This pull request was automatically generated by Snyk to apply the necessary security fix.

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[gemini-code-assist]

Code Review

This pull request from Snyk aims to upgrade urllib3 to version 2.6.0 to address security vulnerabilities. While the intention is good, this change introduces a critical dependency conflict. The new urllib3 version is incompatible with older versions of requests that are pinned in several of this project's test requirement files. This will likely cause the CI builds to fail. Please see the detailed comment for more information.

[gemini-code-assist]

This change introduces a dependency conflict that will likely break your CI build.

The new requirement urllib3>=2.6.0 is incompatible with requests==2.25.1, which is pinned in several test_requirements/*.txt files (e.g., test_requirements/requirements_310_optional.txt).

• requests==2.25.1 requires urllib3<1.27.
• This PR adds a requirement for urllib3>=2.6.0.

This conflict will cause pip to fail during dependency installation for test environments using the older requests version.

To resolve this, requests should be upgraded to a version compatible with urllib3>=2.0 (e.g., requests>=2.30.0) in all relevant test_requirements files. This PR should be updated to include those changes, or a new PR should be created to handle the requests upgrade.