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fix for tag mirror #268; partial fix for retro-superperiod #265

Status: Merged (completed).

nmfs-ost/ss3-source-codenumber 270

#270 In nmfs-ost/ss3-source-code;

· by Rick-Methot-NOAA was closed on Mar 11, 2022

cumulative proportion female numbers don't make sense for male to female hermaphroditic species

biology

bugSomething isn't working; don't remove label after fixingSomething isn't working; don't remove label after fixing

Status: Closed (completed).

#246 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Apr 4, 2022

allow constant (not estimated) F with F_Method=4

fishing mortality

revisionrevise existing feature; use wishlist for newrevise existing feature; use wishlist for new

Status: Closed (completed).

#243 In nmfs-ost/ss3-source-code;

· by Rick-Methot-NOAA was closed on Apr 4, 2022

mceval not working past 999

bugSomething isn't working; don't remove label after fixingSomething isn't working; don't remove label after fixing

Status: Closed (completed).

#245 In nmfs-ost/ss3-source-code;

· by kellijohnson-NOAA was closed on Feb 16, 2022

mirroring of dispersion parameters for tags not working

bugSomething isn't working; don't remove label after fixingSomething isn't working; don't remove label after fixing

change loguse for issues that should appear in change loguse for issues that should appear in change log

Status: Closed (completed).

#268 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Mar 11, 2022

retro with superperiods in comp data not working

bugSomething isn't working; don't remove label after fixingSomething isn't working; don't remove label after fixing

duplicateThis issue or pull request already existsThis issue or pull request already exists

retro

Status: Closed (completed).

#269 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Mar 8, 2022

Getting summary biomass sd not working

bugSomething isn't working; don't remove label after fixingSomething isn't working; don't remove label after fixing

help wantedAttention Rick - please lookAttention Rick - please look

misc. output

new requestinitial entry of a new requestinitial entry of a new request

variance

Status: Closed (completed).

#271 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Mar 28, 2022

log(quantities) for sd_variables

change loguse for issues that should appear in change loguse for issues that should appear in change log

duplicateThis issue or pull request already existsThis issue or pull request already exists

variance

wishlistrequest new feature; bigger than revision; OK to remove after adding to Milestonerequest new feature; bigger than revision; OK to remove after adding to Milestone

Status: Closed (completed).

#79 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Jan 3, 2024

Deprecate jenkins files

workflowsrelated to workflows/gh-actionsrelated to workflows/gh-actions

Status: Closed (completed).

#231 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Dec 6, 2021

Prepare for 3.30.19 release

releasechecklist for model releaseschecklist for model releases

workflowsrelated to workflows/gh-actionsrelated to workflows/gh-actions

Status: Closed (completed).

#238 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Apr 13, 2022

Update rebuild.dat file to include added inputs

forecast

misc. output

resolvedissue resolved, look for "needs test" labelissue resolved, look for "needs test" label

revisionrevise existing feature; use wishlist for newrevise existing feature; use wishlist for new

wishlistrequest new feature; bigger than revision; OK to remove after adding to Milestonerequest new feature; bigger than revision; OK to remove after adding to Milestone

Status: Closed (completed).

#232 In nmfs-ost/ss3-source-code;

· by chantelwetzel-noaa was closed on Mar 22, 2022

Add error for range of month inputs (must be 1.0 - 12.99)

misc. input

Status: Closed (completed).

#262 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Apr 4, 2022

tag-recapture: create user filter to set min number of recaptures for inclusion of a tag-group

change loguse for issues that should appear in change loguse for issues that should appear in change log

tag-recapture

wishlistrequest new feature; bigger than revision; OK to remove after adding to Milestonerequest new feature; bigger than revision; OK to remove after adding to Milestone

Status: Closed (completed).

#280 In nmfs-ost/ss3-source-code;

· by Rick-Methot-NOAA was closed on Apr 4, 2022

posteriors.sso different if MCMC output detail 1 or 2

forecast

Status: Closed (completed).

#259 In nmfs-ost/ss3-source-code;

· by kellijohnson-NOAA was closed on Apr 4, 2022

bio-economics: fleet-specific optimization

bioecon

change loguse for issues that should appear in change loguse for issues that should appear in change log

new requestinitial entry of a new requestinitial entry of a new request

Status: Closed (completed).

#251 In nmfs-ost/ss3-source-code;

· by Rick-Methot-NOAA was closed on Feb 17, 2022

convert catchfleet IF statements to lookup table

code tuneupimprove code logic or execution speedimprove code logic or execution speed

wishlistrequest new feature; bigger than revision; OK to remove after adding to Milestonerequest new feature; bigger than revision; OK to remove after adding to Milestone

Status: Closed (completed).

#192 In nmfs-ost/ss3-source-code;

· by Rick-Methot-NOAA was closed on Apr 4, 2022

add warning/exit for undefine/obsolete selectivity patterns

r4ssr4ss may need changes based on this issue.r4ss may need changes based on this issue.

warnings

Status: Closed (completed).

#228 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Apr 4, 2022

Allow subfolders and new filenames for ss_new output

change loguse for issues that should appear in change loguse for issues that should appear in change log

misc. output

workflowsrelated to workflows/gh-actionsrelated to workflows/gh-actions

Status: Closed (completed).

#226 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Apr 4, 2022

fleet_type = 4 = Predator to create M2

change loguse for issues that should appear in change loguse for issues that should appear in change log

fishing mortality

fleet characteristics

predatorrelated to M2, predation mortalityrelated to M2, predation mortality

wishlistrequest new feature; bigger than revision; OK to remove after adding to Milestonerequest new feature; bigger than revision; OK to remove after adding to Milestone

Status: Closed (completed).

#45 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Dec 8, 2021

add option for constant or 0 selectivity below first knot in cubic spline

change loguse for issues that should appear in change loguse for issues that should appear in change log

selectivity

wishlistrequest new feature; bigger than revision; OK to remove after adding to Milestonerequest new feature; bigger than revision; OK to remove after adding to Milestone

Status: Closed (completed).

#86 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Apr 4, 2022

rebuild.sso Add new lines for sigma, pstar, and implementation error

duplicateThis issue or pull request already existsThis issue or pull request already exists

misc. output

questionFurther information is requestedFurther information is requested

Status: Closed (completed).

#19 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Mar 8, 2022

Re-running each MCMC saved sample to get a report file in Hake assessment

change loguse for issues that should appear in change loguse for issues that should appear in change log

run control

Status: Closed (completed).

#70 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Jan 6, 2022

update N_nudata text in starter.ss_new

Status: Closed (completed).

#72 In nmfs-ost/ss3-source-code;

· by k-doering-NOAA was closed on Feb 21, 2022

SSB with external wtatage: clarify inclusion of age 0 fish

questionFurther information is requestedFurther information is requested

Status: Closed (completed).

#103 In nmfs-ost/ss3-source-code;

· by iantaylor-NOAA was closed on Dec 15, 2021

bug in multi-season forecast catch output

bugSomething isn't working; don't remove label after fixingSomething isn't working; don't remove label after fixing

forecast

Status: Closed (completed).

#205 In nmfs-ost/ss3-source-code;

· by Rick-Methot-NOAA was closed on Dec 17, 2021