Merge tag '23.2.1'

23.2.1 (March 06, 2024)

Bug fix release in the 23.2.x series.

Masks, BOLD references and T2\* maps resampled into template spaces had
their order of transforms inverted. BOLD files were unaffected.

This release also preserves the TR in the NIfTI header of BOLD series.

* FIX: Preserve pixdim4+ of resampled images (#3239)
* FIX: Flip order of transforms in ``init_ds_volumes_wf`` (#3238)
* DOCKER: restore mincinfo binary (#3249)
* CI: Move to new CircleCI machine tags (#3247)

.github/workflows/contrib.yml

@@ -4,11 +4,9 @@ on:
   push:
     branches:
       - master
-      - maint/*
   pull_request:
     branches:
       - master
-      - maint/*
 
 defaults:
   run:

CHANGES.rst

@@ -1,3 +1,18 @@
+23.2.1 (March 06, 2024)
+=======================
+Bug fix release in the 23.2.x series.
+
+Masks, BOLD references and T2\* maps resampled into template spaces had
+their order of transforms inverted. BOLD files were unaffected.
+
+This release also preserves the TR in the NIfTI header of BOLD series.
+
+* FIX: Preserve pixdim4+ of resampled images (#3239)
+* FIX: Flip order of transforms in ``init_ds_volumes_wf`` (#3238)
+* DOCKER: restore mincinfo binary (#3249)
+* CI: Move to new CircleCI machine tags (#3247)
+
+
 23.2.0 (January 10, 2024)
 =========================
 New feature release in the 23.2.x series.

fmriprep/interfaces/resampling.py

@@ -588,6 +588,8 @@ def resample_image(
     )
     resampled_img = nb.Nifti1Image(resampled_data, target.affine, target.header)
     resampled_img.set_data_dtype('f4')
+    # Preserve zooms of additional dimensions
+    resampled_img.header.set_zooms(target.header.get_zooms()[:3] + source.header.get_zooms()[3:])
 
     return resampled_img
 

fmriprep/workflows/bold/outputs.py

@@ -735,8 +735,10 @@ def init_ds_volumes_wf(
     workflow.connect([
         (inputnode, raw_sources, [('source_files', 'in_files')]),
         (inputnode, boldref2target, [
-            ('boldref2anat_xfm', 'in1'),
-            ('anat2std_xfm', 'in2'),
+            # Note that ANTs expects transforms in target-to-source order
+            # Reverse this for nitransforms-based resamplers
+            ('anat2std_xfm', 'in1'),
+            ('boldref2anat_xfm', 'in2'),
         ]),
         (inputnode, ds_bold, [
             ('source_files', 'source_file'),