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TEMPLATE: Parallelize pipeline GHA tests over docker/conda/singularity #3214

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merged 17 commits into from
Oct 11, 2024
Merged

TEMPLATE: Parallelize pipeline GHA tests over docker/conda/singularity #3214

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972de9d
Parallelize pipeline GHA tests over docker/conda/singularity
maxulysse Oct 10, 2024
8ab88cb
[automated] Fix code linting
nf-core-bot Oct 10, 2024
ba6b661
fix GHA
maxulysse Oct 10, 2024
35d7e08
fix template strings
maxulysse Oct 10, 2024
a1ff5e9
add TODO
maxulysse Oct 10, 2024
45012dd
Fix name
maxulysse Oct 10, 2024
991fa5e
Merge branch 'dev' into maxulysse-patch-6
maxulysse Oct 10, 2024
27be623
Apply suggestions from code review
maxulysse Oct 10, 2024
eb2be9a
Update nf_core/pipeline-template/.github/workflows/ci.yml
maxulysse Oct 10, 2024
1c8d74b
test -> test_name
maxulysse Oct 10, 2024
7556c0a
Update nf_core/pipeline-template/.github/workflows/ci.yml
maxulysse Oct 10, 2024
b51770c
more comments
maxulysse Oct 10, 2024
42f1de4
Update nf_core/pipeline-template/.github/workflows/ci.yml
maxulysse Oct 10, 2024
ac3d577
minimise raw and endraw blocks
mirpedrol Oct 10, 2024
71d348d
Update CHANGELOG.md
maxulysse Oct 10, 2024
dfe65d4
Merge branch 'dev' into maxulysse-patch-6
maxulysse Oct 10, 2024
3bd7105
Update nf_core/pipeline-template/.github/workflows/ci.yml
maxulysse Oct 11, 2024
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Update nf_core/pipeline-template/.github/workflows/ci.yml 
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
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@maxulysse @mashehu
maxulysse and mashehu authored Oct 11, 2024
commit 3bd7105bb4199986db958409eb3494e09ad72420
3 changes: 0 additions & 3 deletions nf_core/pipeline-template/.github/workflows/ci.yml
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Expand Up @@ -74,9 +74,6 @@ jobs:
- name: Set up Conda
if: matrix.profile == 'conda'
run: |
conda clean -a
conda install -n base conda-libmamba-solver
conda config --set solver libmamba
echo $(realpath $CONDA)/condabin >> $GITHUB_PATH
echo $(realpath python) >> $GITHUB_PATH

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