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[Project] Make nf-core create more customisable #2340

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Description

The nf-core template is central to the community and is increasingly important, both as the community grows (more nf-core pipelines) and as the tooling is used for non nf-core pipelines more and more.

There are a few specific tasks to do here, this issue is to track the overall progress.

Tasks

  1. command line tools documentation
  2. command line tools
  3. command line tools
  4. command line tools
  5. template
  6. template
  7. template
  8. template
  9. command line tools
  10. enhancement infrastructure template
    mirpedrol
  11. command line tools
  12. enhancement
  13. enhancement
  14. enhancement
  15. enhancement
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