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Description
openedon Jun 11, 2024
Description of feature
I was running taxprofiler mapping reads to metaphlan and I was not obtaining a combined report table until I used --run_profile_standardisation (following @jfy133 advice). I think it is not obvious the link between this parameter and obtaining the combined report table (metaphlan_<db_name>_combined_reports.txt). Perhaps it needs to be explained in the parameters explanations/help text or an additional flag should be created for that?
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