add command line option --inhibit-vep #246
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mandawilson
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Apr 1, 2020
vcf2maf.pl
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| @@ -762,7 +766,7 @@ sub GetBiotypePriority { | |||
| # If that gene has no user-preferred isoform, then use the VEP-preferred (canonical) isoform | |||
| ( $maf_effect ) = grep { $_->{SYMBOL} and $_->{SYMBOL} eq $maf_gene and $_->{CANONICAL} and $_->{CANONICAL} eq "YES" } @all_effects unless( $maf_effect ); | |||
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| # If that gene has no VEP-preferred isoform either, then choose the worst affected user-preferred isoform with a gene symbol | |||
| # If that gene has no VEP-preferred isoform either, then choose the worst affectek user-preferred isoform with a gene symbol | |||
- update docs and README
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@sheridancbio @mandawilson just noticed this PR. Lemme take a look and see how best to merge this. Thanks! |
ckandoth
approved these changes
Apr 17, 2020
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also update docs and README