Pagination Fix

build/jobs/e2e-tests.yml

@@ -40,9 +40,11 @@ steps:
         $acrSettings = $appSettings | where {$_.Name -eq "FhirServer__Operations__ConvertData__ContainerRegistryServers__0"}
         $acrLoginServer = $acrSettings[0].Value
         $acrAccountName = ($acrLoginServer -split '\.')[0]
-        $acrPassword = (Get-AzContainerRegistryCredential -ResourceGroupName $(ResourceGroupName) -Name $acrAccountName).Password
-        Write-Host "##vso[task.setvariable variable=TestContainerRegistryServer]$($acrLoginServer)"
-        Write-Host "##vso[task.setvariable variable=TestContainerRegistryPassword]$($acrPassword)"
+
+        ## This needs to be moved to MI, WI #125246  
+        # $acrPassword = (Get-AzContainerRegistryCredential -ResourceGroupName $(ResourceGroupName) -Name $acrAccountName).Password
+        # Write-Host "##vso[task.setvariable variable=TestContainerRegistryServer]$($acrLoginServer)"
+        # Write-Host "##vso[task.setvariable variable=TestContainerRegistryPassword]$($acrPassword)"
 
         $exportStoreSettings = $appSettings | where {$_.Name -eq "FhirServer__Operations__Export__StorageAccountUri"}
         $exportStoreUri = $exportStoreSettings[0].Value
@@ -97,8 +99,6 @@ steps:
       'TestEnvironmentUrl_${{ parameters.version }}_Sql': $(TestEnvironmentUrl_${{ parameters.version }}_Sql)
       'Resource': $(Resource)
       'AllStorageAccounts': $(AllStorageAccounts)
-      'TestContainerRegistryServer': $(TestContainerRegistryServer)
-      'TestContainerRegistryPassword': $(TestContainerRegistryPassword)
       'TestExportStoreUri': $(TestExportStoreUri)
       'TestExportStoreKey': $(TestExportStoreKey)
       'TestIntegrationStoreUri': $(TestIntegrationStoreUri)

docs/rest/Bug Repros/Pagination Bug - 8-2024/PaginationBug.http

@@ -0,0 +1,110 @@
+@hostname = localhost:44348
+
+### Get the bearer token, if authentication is enabled
+# @name bearer
+POST https://{{hostname}}/connect/token
+content-type: application/x-www-form-urlencoded
+
+grant_type=client_credentials
+&client_id=globalAdminServicePrincipal
+&client_secret=globalAdminServicePrincipal
+&scope=fhir-api
+
+###
+@token = {{bearer.response.body.access_token}}
+
+### Pagination bug 1 - Counting included resources and missing matched resources when using include, decending sort, and the right _count value 
+# Setup test data
+# @name batch
+POST https://{{hostname}}
+Content-Type: application/json
+Authorization: Bearer {{token}}
+
+< ./PaginationBugData.json
+
+### Reindex
+# Trigger a reindexing operation.
+# @name reindex
+POST https://{{hostname}}/$reindex HTTP/1.1
+Authorization: Bearer {{token}}
+content-type: application/json
+
+{  "resourceType": "Parameters", "parameter": [] }
+
+### Records the reindex job location
+@reindexLocation = {{reindex.response.headers.Content-Location}}
+
+###
+# Check the status of the reindexing operation
+GET {{reindexLocation}} HTTP/1.1
+Authorization: Bearer {{token}}
+
+###
+# Count <=2 gives one match and no next link, total = 1
+# Count =3 gives one match and a next link, total = 2
+# Count >=4 gives two matches and no next link, total = 2
+#
+# With just Condition:extension-care-goals a count of 2 produces the issue
+POST https://{{hostname}}/Condition/_search
+Content-Type: application/x-www-form-urlencoded
+Accept: application/json, text/plain, */*
+Authorization: Bearer {{token}}
+
+patient=859f091b-75a0-4690-8f45-ce192c5e045a
+&category=main
+&_count=2
+&_total=accurate
+&_sort=-onset-date
+&_include=Condition:extension-care-goals
+
+###
+# when the sort order is decreasing 
+GET https://{{hostname}}/MedicationDispense?_include=MedicationDispense:prescription&_sort=-whenprepared&_count=3&_total=accurate&_tag=a696ad4e-9e07-4266-8727-d1e3b9f193cd
+Authorization: Bearer {{token}}
+
+
+### Pagination bug 2 - Reverse chain counting deleted resources when it shouldn't
+# Setup data
+POST https://{{hostname}}
+Content-Type: application/json
+Authorization: Bearer {{token}}
+
+< ./PaginationBugData2.json
+
+### Delete Patient
+DELETE https://{{hostname}}/Patient/pagination-patient2
+Authorization: Bearer {{token}}
+
+### Gets the first patient but has the wrong total value
+# @name getservicerequest
+POST https://{{hostname}}/Patient/_search
+Content-Type: application/x-www-form-urlencoded
+Authorization: Bearer {{token}}
+
+_total=accurate
+&_count=1
+&_has:CareTeam:patient:participant=pagination-practitioner1
+
+### Gets the summary count (also wrong)
+GET https://{{hostname}}/Patient?_summary=count&_has:CareTeam:patient:participant=pagination-practitioner1
+Authorization: Bearer {{token}}
+
+### Tests if a non-existant referenced resource is counted (it isn't)
+PUT https://{{hostname}}/CareTeam/pagination-careteam4
+Content-Type: application/json
+Authorization: Bearer {{token}}
+
+{
+    "resourceType": "CareTeam",
+    "id": "pagination-careteam4",
+    "participant": [
+        {
+            "member": {
+                "reference": "Practitioner/pagination-practitioner1"
+            }
+        }
+    ],
+    "subject": {
+        "reference": "Patient/pagination-patient-invalid"
+    }
+}

docs/rest/Bug Repros/Pagination Bug - 8-2024/PaginationBugData.json

@@ -0,0 +1,153 @@
+{
+	"resourceType": "Bundle",
+	"type": "batch",
+	"entry": [
+	{
+		"resource": {
+			"resourceType": "Condition",
+			"id": "c96b32a1-ac09-4c1a-8007-0baa001f16ac",
+			"extension": [
+			{
+				"extension": [
+				{
+					"url": "care_goal",
+					"valueReference": {
+						"reference": "Goal/fc7e482e-c69c-4027-9d06-a3ca1131c03f",
+						"type": "Goal",
+						"display": "John Smith"
+					}
+				},
+				{
+					"url": "care_goal",
+					"valueReference": {
+						"reference": "Goal/18f1d605-351e-4db9-ae2a-c2749b42ccbf",
+						"type": "Goal",
+						"display": "John Smith"
+					}
+				}],
+				"url": "https://domo.health/fhir/extension/care_goals"
+			}],
+			"category": [
+			{
+				"coding": [
+				{
+					"system": "http://www.domo.health/coding",
+					"code": "main",
+					"display": "John Smith"
+				}],
+				"text": "Diagnosis that can have Subsidiary diagnosis"
+			}],
+			"subject": {
+				"reference": "Patient/859f091b-75a0-4690-8f45-ce192c5e045a",
+				"type": "Patient"
+			},
+			"onsetDateTime": "2024",
+			"recordedDate": "2024-08-07T10:50:35.441Z"
+		},
+		"request": { 
+			"method": "PUT",
+			"url": "Condition/c96b32a1-ac09-4c1a-8007-0baa001f16ac"
+		}
+	},
+	{
+		"resource": {
+			"resourceType": "Goal",
+			"id": "fc7e482e-c69c-4027-9d06-a3ca1131c03f",
+			"lifecycleStatus": "active",
+			"subject": {
+				"reference": "Patient/859f091b-75a0-4690-8f45-ce192c5e045a",
+				"type": "Patient"
+			},
+			"description": [
+			{
+				"text": "something"	
+			}],
+			"startDate": "2024-06-24",
+			"statusDate": "2024-06-24"
+		},
+		"request": { 
+			"method": "PUT",
+			"url": "Goal/fc7e482e-c69c-4027-9d06-a3ca1131c03f"
+		}
+	},
+	{
+		"resource": {
+			"resourceType": "Goal",
+			"id": "18f1d605-351e-4db9-ae2a-c2749b42ccbf",
+			"lifecycleStatus": "active",
+			"subject": {
+				"reference": "Patient/859f091b-75a0-4690-8f45-ce192c5e045a",
+				"type": "Patient"
+			},
+			"description": [
+			{
+				"text": "something"	
+			}],
+			"startDate": "2024-07-10",
+			"statusDate": "2024-07-10"
+		},
+		"request": { 
+			"method": "PUT",
+			"url": "Goal/18f1d605-351e-4db9-ae2a-c2749b42ccbf"
+		}
+	},
+	{
+		"resource": {
+			"resourceType": "Condition",
+			"id": "7b06a53c-1eb4-4352-a810-d9b4651d1b1f",
+			"category": [
+			{
+				"coding": [
+				{
+					"system": "http://www.domo.health/coding",
+					"code": "main",
+					"display": "John Smith"
+				}],
+				"text": "Diagnosis that can have Subsidiary diagnosis"
+			}],
+			"subject": {
+				"reference": "Patient/859f091b-75a0-4690-8f45-ce192c5e045a",
+				"type": "Patient"
+			},
+			"recordedDate": "2024-06-12T11:40:41.846Z"
+		},
+		"request": { 
+			"method": "PUT",
+			"url": "Condition/7b06a53c-1eb4-4352-a810-d9b4651d1b1f"
+		}
+	},
+	{
+		"resource": {
+			"resourceType": "SearchParameter",
+			"url": "https://domo.health/fhir/search-params/extension-care-goals",
+			"name": "extensionCareGoals",
+			"publisher": "DomoSafety SA",
+			"status": "active",
+			"contact": [
+			{
+				"telecom": [
+				{
+					"system": "url",
+					"value": "https://www.domo-safety.com/"
+			}]
+			}],
+			"description": "Returns care goals with a goal id matching the specified string.",
+			"code": "extension-care-goals",
+			"base": [
+				"Composition",
+				"Condition",
+				"MedicationRequest",
+				"ServiceRequest"
+			],
+			"type": "reference",
+			"expression": "extension.where(url = 'https://domo.health/fhir/extension/care_goals').extension.where(url = 'care_goal').value",
+			"multipleOr": true,
+			"multipleAnd": true
+		},
+		"request": { 
+			"method": "POST",
+			"url": "SearchParameter"
+		}
+	}
+	]
+}

docs/rest/Bug Repros/Pagination Bug - 8-2024/PaginationBugData2.json

@@ -0,0 +1,106 @@
+{
+	"resourceType": "Bundle",
+	"type": "batch",
+	"entry": [
+    {
+        "resource": {
+            "resourceType": "CareTeam",
+            "id": "pagination-careteam1",
+            "participant": [
+                {
+                    "member": {
+                        "reference": "Practitioner/pagination-practitioner1"
+                    }
+                }
+            ],
+            "subject": {
+                "reference": "Patient/pagination-patient1"
+            }
+        },
+        "request": {
+            "method": "PUT",
+            "url": "CareTeam/pagination-careteam1"
+        }
+    },
+    {
+        "resource": {
+            "resourceType": "CareTeam",
+            "id": "pagination-careteam2",
+            "participant": [
+                {
+                    "member": {
+                        "reference": "Practitioner/pagination-practitioner1"
+                    }
+                }
+            ],
+            "subject": {
+                "reference": "Patient/pagination-patient2"
+            }
+        },
+        "request": {
+            "method": "PUT",
+            "url": "CareTeam/pagination-careteam2"
+        }
+    },
+    {
+        "resource": {
+            "resourceType": "CareTeam",
+            "id": "pagination-careteam3",
+            "participant": [
+                {
+                    "member": {
+                        "reference": "Practitioner/pagination-practitioner1"
+                    }
+                }
+            ],
+            "subject": {
+                "reference": "Patient/pagination-patient3"
+            }
+        },
+        "request": {
+            "method": "PUT",
+            "url": "CareTeam/pagination-careteam3"
+        }
+    },
+    {
+        "resource": {
+            "resourceType": "Patient",
+            "id": "pagination-patient1"
+        },
+        "request": {
+            "method": "PUT",
+            "url": "Patient/pagination-patient1"
+        }
+    },
+    {
+        "resource": {
+            "resourceType": "Patient",
+            "id": "pagination-patient2"
+        },
+        "request": {
+            "method": "PUT",
+            "url": "Patient/pagination-patient2"
+        }
+    },
+    {
+        "resource": {
+            "resourceType": "Patient",
+            "id": "pagination-patient3"
+        },
+        "request": {
+            "method": "PUT",
+            "url": "Patient/pagination-patient3"
+        }
+    },
+    {
+        "resource": {
+            "resourceType": "Practitioner",
+            "id": "pagination-practitioner1"
+        },
+        "request": {
+            "method": "PUT",
+            "url": "Practitioner/pagination-practitioner1"
+        }
+    }
+    ]
+}