Add placeholder for lcmsLipidomics workflow in wdl

microbiomedata · Oct 1, 2024 · 10ecd92 · 10ecd92
1 parent 5c4ef46
commit 10ecd92
Showing 1 changed file with 20 additions and 0 deletions.
diff --git a/wdl/metaMS_gcms.wdl b/wdl/metaMS_gcms.wdl
@@ -40,6 +40,26 @@ task runMetaMSGCMS {
         File output_metafile = "${output_directory}/${output_filename}.json"
     }
 
+    runtime {
+        docker: "microbiomedata/metams:2.2.2"
+    }
+}
+
+workflow lcmsLipidomics{
+    call runLipidomicsMetaMS
+
+}
+
+task lcmsLipidomics{
+    input {
+        File lipid_workflow_toml_path
+    }
+
+    command {
+        metaMS run-lipidomics-workflow \
+            ${lipid_workflow_toml_path} 
+    }
+
     runtime {
         docker: "microbiomedata/metams:2.2.2"
     }