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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 33 9

  2. docs docs Public

    User-facing, web-based documentation about the NMDC

    Dockerfile 1 1

Repositories

Showing 10 of 81 repositories
  • nmdc-field-notes Public

    Mobile app for metadata collection on the go

    microbiomedata/nmdc-field-notes’s past year of commit activity
    TypeScript 2 0 28 1 Updated May 3, 2025
  • nmdc-orcid-creditor Public

    Web app NMDC team members use to credit ambassadors and champions via ORCID

    microbiomedata/nmdc-orcid-creditor’s past year of commit activity
    Python 1 0 2 (1 issue needs help) 1 Updated May 3, 2025
  • nmdc_automation Public

    Prototype automation

    microbiomedata/nmdc_automation’s past year of commit activity
    Python 2 2 60 3 Updated May 2, 2025
  • nmdc_notebooks Public

    Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

    microbiomedata/nmdc_notebooks’s past year of commit activity
    Jupyter Notebook 6 CC0-1.0 0 7 1 Updated May 2, 2025
  • metaPro Public

    Workflow for meta-proteomics analysis

    microbiomedata/metaPro’s past year of commit activity
    Python 6 BSD-2-Clause 3 11 2 Updated May 2, 2025
  • nmdc_mass_spectrometry_metadata_generation Public

    Mass spectrometry metadata generation

    microbiomedata/nmdc_mass_spectrometry_metadata_generation’s past year of commit activity
    Python 1 0 2 0 Updated May 2, 2025
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server’s past year of commit activity
    Python 10 0 135 19 Updated May 2, 2025
  • mg_annotation Public

    Metagenome Annotation Workflow

    microbiomedata/mg_annotation’s past year of commit activity
    WDL 4 7 1 1 Updated May 2, 2025
  • metaMAGs Public

    Workflow for metagenome assembled genomes generation.

    microbiomedata/metaMAGs’s past year of commit activity
    Python 7 4 1 0 Updated May 2, 2025
  • SRA_submit Public

    ncbi export

    microbiomedata/SRA_submit’s past year of commit activity
    Python 1 0 0 0 Updated May 1, 2025
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