Update lipid workflow module and params for cli #25

	name: MiniWDL linter CI

	on:
	push:
	workflow_dispatch:

	jobs:
	run-miniwdl:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout repository
	uses: actions/checkout@v2

	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: '3.8' # specify the Python version you need

	- name: Install MiniWDL
	run: \|
	python -m pip install --upgrade pip
	pip install miniwdl

	# TODO KRH: Add these back in once the WDL and docker images are ready
	# - name: Test LCMS Lipid MiniWDL
	# run: \|
	# miniwdl run wdl/metaMS_lipidomics.wdl -i wdl/metams_input_lipidomics.json

	- name: Test GCMS MiniWDL
	run: \|
	# Add the commands to run your MiniWDL workflow
	miniwdl run wdl/metaMS_gcms.wdl -i wdl/metams_input_gcms.json --verbose --no-cache --copy-input-files

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