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snpick Public
Forked from PathoGenOmics-Lab/snpicksnpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performance.
Rust GNU General Public License v3.0 UpdatedNov 20, 2024 -
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SNP2Cluster Public
Forked from stanikae/SNP2ClusterCore SNP-based clustering for enhanced transmission cluster detection in outbreak scenarios
HTML UpdatedOct 23, 2024 -
get_MNV Public
Forked from PathoGenOmics-Lab/get_MNVIdentifies multiple SNVs within the same codon, reclassifies them as MNVs, and accurately computes resulting amino acid changes from genomic reads
Rust GNU General Public License v3.0 UpdatedOct 13, 2024 -
academicpages.github.io Public template
Forked from academicpages/academicpages.github.ioGithub Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
JavaScript MIT License UpdatedOct 3, 2024 -
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skDER Public
Forked from raufs/skDERskDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics.
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 3, 2024 -
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NTMtools Public
Forked from ngs-fzb/NTMtoolsThis repository contains scripts and manuals used in the paper "Delineating Mycobacterium abscessus population structure and transmission employing high-resolution core genome multilocus sequence t…
Shell UpdatedMay 23, 2024 -
scientisttools Public
Forked from enfantbenidedieu/scientisttoolsJupyter Notebook MIT License UpdatedApr 21, 2024 -
PythonTUBS Public
Forked from bpucker/PythonTUBSPython introduction for life scientists
Python GNU General Public License v3.0 UpdatedMar 25, 2024 -
public-health-pipeline-best-practices Public
Forked from pha4ge/public-health-pipeline-best-practices1 UpdatedMar 25, 2024 -
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tidytacos Public
Forked from LebeerLab/tidytacosFunctions to manipulate and visualize microbial community data
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CompMutTB Public
Forked from NinaMercedes/CompMutTBStatistical framework to identify compensatory mutations from M. tuberculosis WGS.
R UpdatedMar 2, 2024 -
MetaCerberus Public
Forked from raw-lab/MetaCerberusPython code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focus of shotgun metaomics data
HTML BSD 3-Clause "New" or "Revised" License UpdatedFeb 14, 2024 -
ggplot2-graphic-design Public
Forked from rstudio-conf-2022/ggplot2-graphic-design"Graphic Design with ggplot2", a 2-day rstudio::conf(2022) Workshop by Cédric Scherer
R Other UpdatedJan 6, 2024 -
sphae Public
Forked from linsalrob/sphaeNEW!!! Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
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Toolkit for processing sequences in FASTA/Q formats
C MIT License UpdatedOct 24, 2023 -
bakHEAT Public
Forked from oschwengers/bakHEATVisualize microbial evolution at the SNP level!
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P-DOR Public
Forked from SteMIDIfactory/P-DORQuick and easy outbreak reconstruction pipeline
Python GNU General Public License v3.0 UpdatedSep 21, 2023 -
awesome-bioinformatics-education Public
Forked from lskatz/awesome-bioinformatics-educationresources for bioinformatics education
Creative Commons Zero v1.0 Universal UpdatedSep 19, 2023 -
DeepPheWAS Public
Forked from Richard-Packer/DeepPheWASAn R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)
R GNU General Public License v3.0 UpdatedSep 8, 2023 -
wowchemy-hugo-themes Public
Forked from HugoBlox/hugo-blox-builder😍 EASILY BUILD THE WEBSITE YOU WANT - NO CODE, JUST MARKDOWN BLOCKS! 创建在线课程，学术简历或初创网站。#OpenScience
SCSS MIT License UpdatedSep 7, 2023 -
GSBAfrica2023 Public
Forked from WCSCourses/GSBAfrica2023GSBAfrica course manual site
Creative Commons Zero v1.0 Universal UpdatedAug 3, 2023 -
Online_R_learning Public
Forked from cxli233/Online_R_learningOnline R learning for applied statistics
Creative Commons Zero v1.0 Universal UpdatedJul 27, 2023 -
ggplot2-book Public
Forked from hadley/ggplot2-bookggplot2: elegant graphics for data analysis
Perl UpdatedJul 14, 2023 -
iqtree2 Public
Forked from iqtree/iqtree2NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
C++ GNU General Public License v2.0 UpdatedJul 13, 2023