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Feature/methods docs improvement #162

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merged 11 commits into from
Jul 23, 2024

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  • adding a template for class docstring sphinx rendering
  • removing methods and attributes from classes
  • cleaning docstrings and methods

@crismunoz crismunoz merged commit 8995ec5 into holisticai-v1 Jul 23, 2024
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crismunoz added a commit that referenced this pull request Jul 26, 2024
* v1-draft

* update docs folder (#118)

* new Holistic AI struct (#116)

* many things

* merge struct and docs

* fix: plot docs and cookbook for plots (#120)

* Docstrings bias metrics (#122)

* docs: formatting docstrings to numpy-like docs format

* chore: updating pyproject to ignore mitigation folder

* refactor: updating code with recommended ruff practices

* fix: updating pyproject for ruff support

* chore: updating pyprojectt

* chore: updating pyproject

* docs: updating docstrings for commons in bias mitigation methods (#123)

* docs: updating docstrings for commons in bias mitigation methods

* docs: updating docstrings for preprocessing bias mitigation methods

* update: inprocessing mitigation docstrings (#124)

* Holisticai v1 core (#125)

* many things

* merge struct and docs

* update dataset and mitigation

* update unused docs

* update dataet map function (#127)

* update dataet map function

* filter

* ok

* fix: headers

* Recsys tests (#128)

* feat: adding seed to allow reproducibility to synthetic generation ranking

* feat: adding recsys dataset and tolerance threshold parameter in check results function

* tests: adding tests for recsys mitigators for in-, pre-, and post-processing methods

* refactor: refactoring recsys tutorials with new dataset function

* refactor: refactoring recsys measuring bias tutorial with new dataset and updated paths

* tests: bias mitigation for clustering and clustering tutorials (#129)

Co-authored-by: crismunoz <cristian.munoz@holisticai.com>

* refactor: updating tutorials with new dataset and updating paths (#132)

* reafactory: clean files (#133)

* reafactory: clean files

* fix: ruff

* update ruff

* docs: classification and multiclassification tutorials (#134)

* fix: dataset and test (#135)

* fix: dataset and test

* fix: format

* chore: fix name

* chore: add cache dir

* chore: create cache dir

* chore: upate python viersion

* update with new versions numpy

* Update workflow

* chore: udpate types

* chore: update dependencies and remove invalid dependencies

* chore: update test

* chore: update changes

* chore: remove import

* adding logo hai

* chore: updat tutorials

* change bias <-> mitigation, metrics

* chore: fix dependencies

* chore update docs

* fix: build documentation

* chore: fix docs

* chore: readthedocs

* chore: fix readthedoscs

* update tutorials

* fix: treat empty oop_metrics

* chore: update numpy version

* chore: add holisticai.bias.plots

* chore: avoid crash old codes

* chore: update plots  old dependencies

* docs: update dataset documentation

* docs: video documentation aligned

* feat: adding xai metrics and plots

* refactor: refactoring fairea codes and tutorial (#137)

* refactor: refactoring fairea codes and tutorial

* chore: adding axis labels

* Feature/update format (#138)

* chore: update format

* chore: update format

* tests: update test

* docs: update documentation

* fix: random_State

* fix: format

* chore: update bias mitigation tests

* chore: update deterministic model in test

* chore: update tests

* Feature/regression tutorials refactor (#139)

* refactor: refactoring tutorials for bias mitigation in regression tasks

* Feature/update format (#138) (#140)

* chore: update format

* chore: update format

* tests: update test

* docs: update documentation

* fix: random_State

* fix: format

* chore: update bias mitigation tests

* chore: update deterministic model in test

* chore: update tests

* refactor: changing tutorial location and adding interactive section selection

* refactor: refactoring tutorials for regression to demos

* chore: removing old files

* docs: updating paths for documentation

* chore: updating tutorial links

* chore updating lists format

---------

Co-authored-by: cristian.munoz <cristian.munoz@holisticai.com>

* Feature/recsys tutorial refactor (#141)

* refactor: refactoring recsys tutorials with new formats

* refactor: refactoring recsys tutorials

* docs: updating codes for tutorials in documentation

* chore: updating tutorial links

* chore: updating lists and formats

* fix: classification and clustering tutorials (#144)

* fix: classification and clustering tutorials

* fix: examples and correlation matrix plot

* docs: bias metrics guide (#145)

* update explainability (#146)

* update explainability

* fix : format

* test: remove test

* feature: update explainability tutorials and docs (#149)

* feature: update explainability tutorials and docs

* fix: ruft lint fixed

* chore: update documentation (#150)

* chore: update documentation

* chore:fmt

* lint (#152)

* docs: update documentation requirements

* doc: update readthedocs

* chore: update many topics (#158)

* chore: update many topics

* chore: fmt

* chore: update documentation (#159)

* fix: spread divergence with jensen shannon (#155)

* fix: spread divergence with jensen shannon

* fix: ruft lint

* fix: ruft lint

* fix: ruft lint

---------

Co-authored-by: Cristian Muñoz <cristian.munoz@holisticai.com>

* fix: tutorial mlflow (#156)

* chore: acelerate mitigators using jax and pandas (#161)

* chore: acelerate mitigators using jax and pandas

* chore: hatch fmt

* chore: update dependences

* chore: update library dependencies

* docs: explainability and bias description (#160)

* Feature/documentation xai metrics (#164)

* docs: adding xai metrics documentation

* chore: hatch fmt

* docs: fix images folder static (#165)

* chore: update security and exaplainability (#168)

* chore: update security and exaplainability

* test: fix atol

* Feature/methods docs improvement (#162)

* feat: adding template for class docstrings rendering

* docs: updating docstrings for bias mitigation methods

* fix: renaming method

* fix: disabling ruff for privated method

* fix: updating variable name

* fix: updating variable name

* fix: making sensgroups variable public in reweighing

* fix: making sensgroups variable public in reweighing

* docs: fixing lint

* docs: updating methods and references from docstrings

* docs: improve docstring and remove old dependenceis (#169)

* docs: improve docstring and remove old dependenceis

* chore: hatch format

* docs: adding descriptions for inprocessing methods (#151)

* docs: adding descriptions for inprocessing methods

* docs: updating method descriptions, adding index and reformatting sectinos

* docs: adding learning task note for all methods

* docs: adding documentation for adversarial debiasing and debiasing learning methods

---------

Co-authored-by: Cristian Muñoz <cristian.munoz@holisticai.com>

* Feature/rst security (#170)

* docs: improve docstring and remove old dependenceis

* chore: hatch format

* chore: update security info

* docs: update foldername

* chore: fix-format (#171)

* chore: partial dependence formatting (#172)

* chore: partial dependence formatting

* chore: fmt

* chore: fix plots generation docs (#173)

* chore: update install intruction (#174)

---------

Co-authored-by: Kleyton da Costa <44351707+Kleyt0n@users.noreply.github.com>
Co-authored-by: Franklin <44931423+fracarfer5@users.noreply.github.com>
@fracarfer5 fracarfer5 deleted the feature/methods-docs-improvement branch August 5, 2024 13:46
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2 participants