refactor: refactoring fairea codes and tutorial #137
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crismunoz
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Jul 26, 2024
* v1-draft * update docs folder (#118) * new Holistic AI struct (#116) * many things * merge struct and docs * fix: plot docs and cookbook for plots (#120) * Docstrings bias metrics (#122) * docs: formatting docstrings to numpy-like docs format * chore: updating pyproject to ignore mitigation folder * refactor: updating code with recommended ruff practices * fix: updating pyproject for ruff support * chore: updating pyprojectt * chore: updating pyproject * docs: updating docstrings for commons in bias mitigation methods (#123) * docs: updating docstrings for commons in bias mitigation methods * docs: updating docstrings for preprocessing bias mitigation methods * update: inprocessing mitigation docstrings (#124) * Holisticai v1 core (#125) * many things * merge struct and docs * update dataset and mitigation * update unused docs * update dataet map function (#127) * update dataet map function * filter * ok * fix: headers * Recsys tests (#128) * feat: adding seed to allow reproducibility to synthetic generation ranking * feat: adding recsys dataset and tolerance threshold parameter in check results function * tests: adding tests for recsys mitigators for in-, pre-, and post-processing methods * refactor: refactoring recsys tutorials with new dataset function * refactor: refactoring recsys measuring bias tutorial with new dataset and updated paths * tests: bias mitigation for clustering and clustering tutorials (#129) Co-authored-by: crismunoz <cristian.munoz@holisticai.com> * refactor: updating tutorials with new dataset and updating paths (#132) * reafactory: clean files (#133) * reafactory: clean files * fix: ruff * update ruff * docs: classification and multiclassification tutorials (#134) * fix: dataset and test (#135) * fix: dataset and test * fix: format * chore: fix name * chore: add cache dir * chore: create cache dir * chore: upate python viersion * update with new versions numpy * Update workflow * chore: udpate types * chore: update dependencies and remove invalid dependencies * chore: update test * chore: update changes * chore: remove import * adding logo hai * chore: updat tutorials * change bias <-> mitigation, metrics * chore: fix dependencies * chore update docs * fix: build documentation * chore: fix docs * chore: readthedocs * chore: fix readthedoscs * update tutorials * fix: treat empty oop_metrics * chore: update numpy version * chore: add holisticai.bias.plots * chore: avoid crash old codes * chore: update plots old dependencies * docs: update dataset documentation * docs: video documentation aligned * feat: adding xai metrics and plots * refactor: refactoring fairea codes and tutorial (#137) * refactor: refactoring fairea codes and tutorial * chore: adding axis labels * Feature/update format (#138) * chore: update format * chore: update format * tests: update test * docs: update documentation * fix: random_State * fix: format * chore: update bias mitigation tests * chore: update deterministic model in test * chore: update tests * Feature/regression tutorials refactor (#139) * refactor: refactoring tutorials for bias mitigation in regression tasks * Feature/update format (#138) (#140) * chore: update format * chore: update format * tests: update test * docs: update documentation * fix: random_State * fix: format * chore: update bias mitigation tests * chore: update deterministic model in test * chore: update tests * refactor: changing tutorial location and adding interactive section selection * refactor: refactoring tutorials for regression to demos * chore: removing old files * docs: updating paths for documentation * chore: updating tutorial links * chore updating lists format --------- Co-authored-by: cristian.munoz <cristian.munoz@holisticai.com> * Feature/recsys tutorial refactor (#141) * refactor: refactoring recsys tutorials with new formats * refactor: refactoring recsys tutorials * docs: updating codes for tutorials in documentation * chore: updating tutorial links * chore: updating lists and formats * fix: classification and clustering tutorials (#144) * fix: classification and clustering tutorials * fix: examples and correlation matrix plot * docs: bias metrics guide (#145) * update explainability (#146) * update explainability * fix : format * test: remove test * feature: update explainability tutorials and docs (#149) * feature: update explainability tutorials and docs * fix: ruft lint fixed * chore: update documentation (#150) * chore: update documentation * chore:fmt * lint (#152) * docs: update documentation requirements * doc: update readthedocs * chore: update many topics (#158) * chore: update many topics * chore: fmt * chore: update documentation (#159) * fix: spread divergence with jensen shannon (#155) * fix: spread divergence with jensen shannon * fix: ruft lint * fix: ruft lint * fix: ruft lint --------- Co-authored-by: Cristian Muñoz <cristian.munoz@holisticai.com> * fix: tutorial mlflow (#156) * chore: acelerate mitigators using jax and pandas (#161) * chore: acelerate mitigators using jax and pandas * chore: hatch fmt * chore: update dependences * chore: update library dependencies * docs: explainability and bias description (#160) * Feature/documentation xai metrics (#164) * docs: adding xai metrics documentation * chore: hatch fmt * docs: fix images folder static (#165) * chore: update security and exaplainability (#168) * chore: update security and exaplainability * test: fix atol * Feature/methods docs improvement (#162) * feat: adding template for class docstrings rendering * docs: updating docstrings for bias mitigation methods * fix: renaming method * fix: disabling ruff for privated method * fix: updating variable name * fix: updating variable name * fix: making sensgroups variable public in reweighing * fix: making sensgroups variable public in reweighing * docs: fixing lint * docs: updating methods and references from docstrings * docs: improve docstring and remove old dependenceis (#169) * docs: improve docstring and remove old dependenceis * chore: hatch format * docs: adding descriptions for inprocessing methods (#151) * docs: adding descriptions for inprocessing methods * docs: updating method descriptions, adding index and reformatting sectinos * docs: adding learning task note for all methods * docs: adding documentation for adversarial debiasing and debiasing learning methods --------- Co-authored-by: Cristian Muñoz <cristian.munoz@holisticai.com> * Feature/rst security (#170) * docs: improve docstring and remove old dependenceis * chore: hatch format * chore: update security info * docs: update foldername * chore: fix-format (#171) * chore: partial dependence formatting (#172) * chore: partial dependence formatting * chore: fmt * chore: fix plots generation docs (#173) * chore: update install intruction (#174) --------- Co-authored-by: Kleyton da Costa <44351707+Kleyt0n@users.noreply.github.com> Co-authored-by: Franklin <44931423+fracarfer5@users.noreply.github.com>
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refactoring fairea trade-off analyser, updating and cleaning source code and refactoring tutorial with new datasets and graphs