build(deps): bump docker/build-push-action from 6.15.0 to 6.16.0 #1860
+2
−2
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
dependabot
bot
added
dependencies
dependabot
bot
force-pushed
the
dependabot/github_actions/docker/build-push-action-6.16.0
branch
from
49c58c6 to
8e6b203
Compare
JuanPedroGHM
approved these changes
May 2, 2025
JuanPedroGHM
approved these changes
May 5, 2025
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.15.0 to 6.16.0. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](docker/build-push-action@471d1dc...14487ce) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-version: 6.16.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com>
dependabot
bot
force-pushed
the
dependabot/github_actions/docker/build-push-action-6.16.0
branch
from
8e6b203 to
e5d73b6
Compare
JuanPedroGHM
approved these changes
May 5, 2025
JuanPedroGHM
deleted the
dependabot/github_actions/docker/build-push-action-6.16.0
branch
JuanPedroGHM
added a commit
that referenced
this pull request
Sep 3, 2025
* Update heat/core/io.py Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * added test for dndarray.info * added tests for two uncovered exception lines * one additional line from DMD covered * one more line in DMD covered * debugging * build(deps): bump actions/setup-python from 5.4.0 to 5.5.0 Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5.4.0 to 5.5.0. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@4237552...8d9ed9a) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/PyCQA/flake8: 7.1.2 → 7.2.0](PyCQA/flake8@7.1.2...7.2.0) * build(deps): bump github/codeql-action from 3.28.12 to 3.28.13 Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.28.12 to 3.28.13. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@5f8171a...1b549b9) --- updated-dependencies: - dependency-name: github/codeql-action dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * further work on eigh * eigh completed for split = 0 * flake8 * tests for eigh, now split=none,0,1 * build(deps): bump step-security/harden-runner from 2.11.0 to 2.11.1 (#1851) Bumps [step-security/harden-runner](https://github.com/step-security/harden-runner) from 2.11.0 to 2.11.1. - [Release notes](https://github.com/step-security/harden-runner/releases) - [Commits](step-security/harden-runner@4d991eb...c6295a6) --- updated-dependencies: - dependency-name: step-security/harden-runner dependency-version: 2.11.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump actions/dependency-review-action from 4.5.0 to 4.6.0 (#1850) Bumps [actions/dependency-review-action](https://github.com/actions/dependency-review-action) from 4.5.0 to 4.6.0. - [Release notes](https://github.com/actions/dependency-review-action/releases) - [Commits](actions/dependency-review-action@3b139cf...ce3cf95) --- updated-dependencies: - dependency-name: actions/dependency-review-action dependency-version: 4.6.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * minor modifications due to Copilot's Review * added SVD for general case * reformatting * tests for SVD * tests for SVD completed * added module _config in core which is intended to handle MPI, CUDA, and ROCm versioning * added variable GPU_AWARE_MPI * added MPICH * changed method info into __repr__ * moved __repr__ to printing module * removed dead code * restructuring of tests * added further test to DMDc * small typo corrected * adapted tolerances for last test; errors grow w.r.t. timesteps (is in the nature of DMD), so largest number of procs determines tolerance * Update test_dmd.py lower tolerances for the AMD-runner * dummy commit since sth was wrong with pre-commit * corrected tests * debugging of tests * Remove unnecessary contiguous calls (#1831) * removed contiguous calls from manipulations.py * removed the contiguous calls from linalg/qr.py * removed unnecessary contiguous call in factories.py * removed some more unnecessary contiguous calls * reinstate contiguous() calls if needed * removed the contiguous calls from linalg/qr.py * reinstate setting Q_buf to Q_curr --------- Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * build(deps): bump github/codeql-action from 3.28.13 to 3.28.15 Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.28.13 to 3.28.15. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@1b549b9...45775bd) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.28.15 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * removed debugging prints that were forgotten before merging into main * subTest'ified the zarr tests, added some strange exception handling that is likely necessary to accomodate zarr-versions compatible with Python 3.10 * small bug fix * bugfix in eigh * removed unneccesary numpy import * changed representation string according to review * debugging of memory consumption in Polar * bug fixes for devices in polar and eigh * bugfixes for certain device constellations * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update README.md * Support latest PyTorch release * Make unit tests compatible with NumPy 2.x (#1826) * changed row_stack to vstack for numpy >= 2.0.0 * Changed the numpy version check to the numpy suggested method * Changed numpy version requirement * fixed DeprecationWarning from missing axes for np.fft.fftn * Fixed one __array_wrap__ DeprecationWarning * Stopped testing cross of vector axes with 2 elements for numpy >= 2.0 * changed requirements to avoid errors with numpy >= 2 * Using Python 3.10 for RecievePR * changed python-version to '3.10' because 3.10 was interpreted as 3.1 * changed ci.yaml to exclude python 3.9 * Fixed two DeprecationWarnings of np.cross() by adding a third dimension with zeros * Fixed the last np.cross() warning by performing the operation manually * changed dtype of np.cross() to float32 --------- Co-authored-by: Fabian Hoppe <112093564+mrfh92@users.noreply.github.com> Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * build(deps): bump actions/setup-python from 5.5.0 to 5.6.0 (#1863) * build(deps): bump actions/setup-python from 5.5.0 to 5.6.0 Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5.5.0 to 5.6.0. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@8d9ed9a...a26af69) --- updated-dependencies: - dependency-name: actions/setup-python dependency-version: 5.6.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * Debugging --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * build(deps): bump docker/build-push-action from 6.15.0 to 6.16.0 (#1860) Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.15.0 to 6.16.0. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](docker/build-push-action@471d1dc...14487ce) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-version: 6.16.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump step-security/harden-runner from 2.11.1 to 2.12.0 (#1861) Bumps [step-security/harden-runner](https://github.com/step-security/harden-runner) from 2.11.1 to 2.12.0. - [Release notes](https://github.com/step-security/harden-runner/releases) - [Commits](step-security/harden-runner@c6295a6...0634a26) --- updated-dependencies: - dependency-name: step-security/harden-runner dependency-version: 2.12.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump github/codeql-action from 3.28.15 to 3.28.17 (#1866) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.28.15 to 3.28.17. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@45775bd...60168ef) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.28.17 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump actions/dependency-review-action from 4.6.0 to 4.7.0 Bumps [actions/dependency-review-action](https://github.com/actions/dependency-review-action) from 4.6.0 to 4.7.0. - [Release notes](https://github.com/actions/dependency-review-action/releases) - [Commits](actions/dependency-review-action@ce3cf95...38ecb5b) --- updated-dependencies: - dependency-name: actions/dependency-review-action dependency-version: 4.7.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * added benchmarks for eigh, svd, and rsvd * dummy commit to trigger benchmark runs * Support latest PyTorch release * changed torchvision version to <0.22.1 * retrigger checks * build(deps): bump github/codeql-action from 3.28.17 to 3.28.18 Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.28.17 to 3.28.18. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@60168ef...ff0a06e) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.28.18 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * build(deps): bump docker/build-push-action from 6.16.0 to 6.17.0 Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.16.0 to 6.17.0. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](docker/build-push-action@14487ce...1dc7386) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-version: 6.17.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * build(deps): bump actions/dependency-review-action from 4.7.0 to 4.7.1 Bumps [actions/dependency-review-action](https://github.com/actions/dependency-review-action) from 4.7.0 to 4.7.1. - [Release notes](https://github.com/actions/dependency-review-action/releases) - [Commits](actions/dependency-review-action@38ecb5b...da24556) --- updated-dependencies: - dependency-name: actions/dependency-review-action dependency-version: 4.7.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * RTD Notebook gallery and profiling notebook with perun. (#1867) * docs: notebook gallery in rtd * docs: missing makefiles * docs: reverted changes to gitignore * haicore notebook setup * ompi in readthedocs build * correct apt package for mpi * docs: replaced small bodies dataset with digits from sklearn (boring, but easier to access on the long term) * perun notebook * wrong cell type * added pytorch 2.7 to ci workflow * docs: post practice run fixes * notebook thumbnails, formatting and corrections for tutorial * forgot to uncomment autoapi * build(deps): bump github/codeql-action from 3.28.18 to 3.28.19 (#1881) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.28.18 to 3.28.19. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@ff0a06e...fca7ace) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.28.19 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump docker/build-push-action from 6.17.0 to 6.18.0 (#1877) Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.17.0 to 6.18.0. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](docker/build-push-action@1dc7386...2634353) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-version: 6.18.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump ossf/scorecard-action from 2.4.1 to 2.4.2 (#1878) Bumps [ossf/scorecard-action](https://github.com/ossf/scorecard-action) from 2.4.1 to 2.4.2. - [Release notes](https://github.com/ossf/scorecard-action/releases) - [Changelog](https://github.com/ossf/scorecard-action/blob/main/RELEASE.md) - [Commits](ossf/scorecard-action@f49aabe...05b42c6) --- updated-dependencies: - dependency-name: ossf/scorecard-action dependency-version: 2.4.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump step-security/harden-runner from 2.12.0 to 2.12.1 Bumps [step-security/harden-runner](https://github.com/step-security/harden-runner) from 2.12.0 to 2.12.1. - [Release notes](https://github.com/step-security/harden-runner/releases) - [Commits](step-security/harden-runner@0634a26...002fdce) --- updated-dependencies: - dependency-name: step-security/harden-runner dependency-version: 2.12.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * build(deps): bump github/codeql-action from 3.28.19 to 3.29.0 Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.28.19 to 3.29.0. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@fca7ace...ce28f5b) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.29.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * Add special methods for operations in NumPy * add tests for NumPy related array methods * fix variable name * Exit installation if conda environment cannot be activated (#1880) * exit 0_setup_conda.sh if environment cannot be activated otherwise the script might install into the base environment * exit 0_setup_pip.sh if environment cannot be activated --------- Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> * fix item access * add contiguous call again * same as before * [pre-commit.ci] pre-commit autoupdate (#1894) updates: - [github.com/PyCQA/flake8: 7.2.0 → 7.3.0](PyCQA/flake8@7.2.0...7.3.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * bugfix in rSVD for the case the rank is smaller than number of processes * build(deps): bump github/codeql-action from 3.29.0 to 3.29.1 Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.29.0 to 3.29.1. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@ce28f5b...39edc49) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.29.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * resolved bug in rSVD, actualle one-process QR * Support PyTorch 2.7.1 (#1883) * Support latest PyTorch release * Update ci.yaml pytorch: add v2.2, drop v1.11 * debugging test_lasso * Support latest PyTorch release * Update bug_report.yml Add latest versions for options * update torchvision * do not test latest torch in matrix * pin zarr version * remove dead code * pin zarr to 3.0.8 * add back latest pytorch to matrix * edit PR body * Update ci.yaml --------- Co-authored-by: ClaudiaComito <39374113+ClaudiaComito@users.noreply.github.com> Co-authored-by: Michael Tarnawa <m.tarnawa@fz-juelich.de> Co-authored-by: Michael Tarnawa <18899420+mtar@users.noreply.github.com> * build(deps): bump docker/setup-buildx-action from 3.10.0 to 3.11.1 Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 3.10.0 to 3.11.1. - [Release notes](https://github.com/docker/setup-buildx-action/releases) - [Commits](docker/setup-buildx-action@b5ca514...e468171) --- updated-dependencies: - dependency-name: docker/setup-buildx-action dependency-version: 3.11.1 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * Update polar.py * Revert "build(deps): bump docker/setup-buildx-action from 3.10.0 to 3.11.1" (#1908) * support torch_function (#1895) Co-authored-by: Fabian Hoppe <112093564+mrfh92@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * Features/1845 Update citations (#1846) * Update README.md: added citation possibilities * Update README.md: link to ZENODO * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update README.md * Update README.md * Update README.md --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * Transition to pyproject.toml, Ruff, and mypy (#1832) * Support latest PyTorch release * Support latest PyTorch release * retrigger checks * wip: toml, ruff, mypy and cli * ci: better mypy error filter (down to 3041) * ci: mypy in list of dev deps * ci: skiping mypy for now * dependency specification * missing argument description for permute method * fixed dynamic version in pyproject.toml * properly skipping mypy in the pre-commit.ci * fixed dependencies, removed references to python 3.9, added python 3.13 * doc -> docs * fixed tests * cli tests * Update .github/ISSUE_TEMPLATE/bug_report.yml Co-authored-by: Michael Tarnawa <18899420+mtar@users.noreply.github.com> * removed problematic pytorch version?! * consistency is important * did not work * vulnerabitliy removal, other changes to toml * It's not working :( * fixing tests * Update .pre-commit-config.yaml * fix: cli does not change the default device * fix: support for older pytorch version on the cli, limit zarr package version * Update pytorch exclude with py-3.13 --------- Co-authored-by: ClaudiaComito <39374113+ClaudiaComito@users.noreply.github.com> Co-authored-by: Marc-Jindra <m.jindra@fz-juelich.de> Co-authored-by: Michael Tarnawa <18899420+mtar@users.noreply.github.com> * build(deps): bump docker/setup-buildx-action from 3.10.0 to 3.11.1 (#1911) Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 3.10.0 to 3.11.1. - [Release notes](https://github.com/docker/setup-buildx-action/releases) - [Commits](docker/setup-buildx-action@b5ca514...e468171) --- updated-dependencies: - dependency-name: docker/setup-buildx-action dependency-version: 3.11.1 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump github/codeql-action from 3.29.1 to 3.29.2 (#1910) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.29.1 to 3.29.2. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@39edc49...181d5ee) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.29.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump step-security/harden-runner from 2.12.1 to 2.12.2 (#1909) Bumps [step-security/harden-runner](https://github.com/step-security/harden-runner) from 2.12.1 to 2.12.2. - [Release notes](https://github.com/step-security/harden-runner/releases) - [Commits](step-security/harden-runner@002fdce...6c439dc) --- updated-dependencies: - dependency-name: step-security/harden-runner dependency-version: 2.12.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * took review into account * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * pre-commit stuff * [pre-commit.ci] pre-commit autoupdate (#1912) updates: - [github.com/astral-sh/ruff-pre-commit: v0.11.13 → v0.12.3](astral-sh/ruff-pre-commit@v0.11.13...v0.12.3) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Updated release_prep.yml to incorporate up-to-date Dockerfile Pytorch versions (#1903) * Create update_docker.yml * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update release-prep.yml Added the update functionality of the Dockerfile.source and Dockerfile.release Pytorch Image versions. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Removed update_docker.yml since the functionality was moved to release prep --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * [StepSecurity] Apply security best practices (#1891) * [StepSecurity] Apply security best practices Signed-off-by: StepSecurity Bot <bot@stepsecurity.io> * Test with shellcheck-py * Update .pre-commit-config.yaml * shellcheck updates * Update build_and_push.sh * Update increment_version.sh * Update increment_version.sh * Update build_and_push.sh * Update test_nvidia_image_haicore_enroot.sh * Update test_nvidia_image_haicore_enroot.sh * Update build_and_push.sh * Update 0_setup_pip.sh --------- Signed-off-by: StepSecurity Bot <bot@stepsecurity.io> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * build(deps): bump korthout/backport-action from 3.2.0 to 3.2.1 Bumps [korthout/backport-action](https://github.com/korthout/backport-action) from 3.2.0 to 3.2.1. - [Release notes](https://github.com/korthout/backport-action/releases) - [Commits](korthout/backport-action@436145e...0193454) --- updated-dependencies: - dependency-name: korthout/backport-action dependency-version: 3.2.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * build(deps): bump step-security/harden-runner from 2.12.1 to 2.13.0 Bumps [step-security/harden-runner](https://github.com/step-security/harden-runner) from 2.12.1 to 2.13.0. - [Release notes](https://github.com/step-security/harden-runner/releases) - [Commits](step-security/harden-runner@v2.12.1...ec9f2d5) --- updated-dependencies: - dependency-name: step-security/harden-runner dependency-version: 2.13.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/pre-commit/mirrors-mypy: v1.16.1 → v1.17.0](pre-commit/mirrors-mypy@v1.16.1...v1.17.0) - [github.com/astral-sh/ruff-pre-commit: v0.12.3 → v0.12.4](astral-sh/ruff-pre-commit@v0.12.3...v0.12.4) - [github.com/gitleaks/gitleaks: v8.16.3 → v8.28.0](gitleaks/gitleaks@v8.16.3...v8.28.0) * Fix ValueError in save_zarr by conditional handling of chunks argument Fixes error when calling zarr.create by only passing chunks as a list if not None. * Unfix zarr version in pyproject.toml to test CI job `test_amd` * Add note in docstring of save_zarr() * build(deps): bump tj-actions/branch-names from 8.2.1 to 9.0.1 Bumps [tj-actions/branch-names](https://github.com/tj-actions/branch-names) from 8.2.1 to 9.0.1. - [Release notes](https://github.com/tj-actions/branch-names/releases) - [Changelog](https://github.com/tj-actions/branch-names/blob/main/HISTORY.md) - [Commits](tj-actions/branch-names@dde14ac...386e117) --- updated-dependencies: - dependency-name: tj-actions/branch-names dependency-version: 9.0.1 dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> * build(deps): bump github/codeql-action from 3.29.2 to 3.29.4 Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.29.2 to 3.29.4. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@181d5ee...4e828ff) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.29.4 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * Setuptools build fix on pytproject.toml (#1919) * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/astral-sh/ruff-pre-commit: v0.12.4 → v0.12.5](astral-sh/ruff-pre-commit@v0.12.4...v0.12.5) * Stride argument for convolution (#1865) * Add: enable stride as input option for convolution Belongs to Issue 1755 Changes include - stride as optional input - stride in docstring (except for output dim computations and as example) - raise ValueError for incorrect option (stride < 1) and combinations (stride > 1 and mode = 'same') * Add: Failing stride tests in test_signal.py - Added correct results for odd and even kernel - Added calls for convolution with stride=2 except with exception for mode `same` - Covers is_mps true and false - Stopped at tests for large distributed signals * Add: Pass stride tests for standard cases Belongs to Issue 1755 - edge cases and batch-processing not yet implemented or tested - Fix test error - Implement stride to pass tests - Write convolution_stride.py script for debugging purposes, will be removed later * Add: test for large signals with stride Belongs to Issue 1755 - passes * Add: Test cases until batch Belongs to issue 1755 - Passes tests * Add: Failing tests for batch convolution with stride Belongs to Issue 1755 * Add: batch processing with stride Belongs to Issue 1755 - Added stride to conv1D call in batch_convolution - Passes tests * Remove: Remove script to test convolution with stride * Update: Docstring of convolution Belongs to Issue 1755 - Correct stride information - Add examples * Fail: Tests fail for mpirun -n3 ... - Issue with halo size - Problem marked in code - Not solved * Update: Split stride tests - Different configurations in different tests functions - If process number == 1: all pass - If multiple process < 3 (because tested only then), 5 fail - This needs to be fixed, likely fails due to wrong halo in presence of stride * Add: Enable stride on distributed arrays but not kernels Adjust signal on each rank such that it starts with the next kernel according to stride - Added the compution of starting values for each rank - Avoid doubles for even and odd kernels Halo size computation is independent of stride Added a script for debugging, will be removed Ideas: generalize it for stride 1 (should work out of the box) To do: Adapt for distributed kernels * Add: Distributed Kernels and optimized start index computation Optimized start index computation: - Remove global index array - Use lshap map and simple modulo operation only Distributed kernels - Any stride > 1 is a subset of the solution for stride 1 - Not the most efficient but at least functional * Fix: Improve test coverage Still missing - Cuda code bits - else statement beginning line 229 * Delete: conv_test.py Test script no longer needed * Add: Add benchmarks for signal.py * Add: script to test benchmark - empty so far * Fix: Benchmarks - Fix run_signal_benchmarks - Add run_signal_benchmarks to main.py Remove: print statements from convolution in signal.py * Fix: benchmarks/cb/signal.py - add () to monitor decorator of perun * Fix: Rename signal.py to avoid clash with python3.12 signal - change signal.py to heat_signal.py * Fix: Adjust array numbers for benchmarking * Remove: benchmark script from scripts/ * Fix: Benchmarking signal.py and testing signal.py - Benchmark improved - removed import pytest from test_signal.py * Fix: test_signal.py batch convolution with stride - Stride was not passed as a single value but different values for different ranks - Solution: Do not randomly create stride values but use fixed values * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix: test_convolution-stride_large_signal_and_kernel_modes - Remove torch arrays - Instead work with np.convolve similar to test without stride * Fix: Add device for empty torch tensors - Stride test fails for large arrays - Error message says, that device does not match - Due to large stride, potentially empty tensor creation -> add device to that tensor created * Fix: torch_device instead of device - when empty tensor is called, use torch_device * Fix: Missed .device to previous commit * Fix: torch device not accessible - instead use str(ht_array.device) - Use signal.device to get correct rank --------- Co-authored-by: Fabian Hoppe <112093564+mrfh92@users.noreply.github.com> Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * build(deps): bump tj-actions/branch-names from 9.0.1 to 9.0.2 (#1930) Bumps [tj-actions/branch-names](https://github.com/tj-actions/branch-names) from 9.0.1 to 9.0.2. - [Release notes](https://github.com/tj-actions/branch-names/releases) - [Changelog](https://github.com/tj-actions/branch-names/blob/main/HISTORY.md) - [Commits](tj-actions/branch-names@386e117...5250492) --- updated-dependencies: - dependency-name: tj-actions/branch-names dependency-version: 9.0.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump github/codeql-action from 3.29.4 to 3.29.8 (#1933) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.29.4 to 3.29.8. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@4e828ff...76621b6) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.29.8 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump docker/login-action from 3.4.0 to 3.5.0 (#1934) Bumps [docker/login-action](https://github.com/docker/login-action) from 3.4.0 to 3.5.0. - [Release notes](https://github.com/docker/login-action/releases) - [Commits](docker/login-action@74a5d14...184bdaa) --- updated-dependencies: - dependency-name: docker/login-action dependency-version: 3.5.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#1931) updates: - [github.com/pre-commit/mirrors-mypy: v1.17.0 → v1.17.1](pre-commit/mirrors-mypy@v1.17.0...v1.17.1) - [github.com/astral-sh/ruff-pre-commit: v0.12.5 → v0.12.7](astral-sh/ruff-pre-commit@v0.12.5...v0.12.7) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> * Update CODE_OF_CONDUCT.md New email for reporting * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * build(deps): bump github/codeql-action from 3.29.8 to 3.29.9 (#1943) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.29.8 to 3.29.9. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@76621b6...df55935) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.29.9 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump actions/checkout from 4.2.2 to 5.0.0 (#1942) Bumps [actions/checkout](https://github.com/actions/checkout) from 4.2.2 to 5.0.0. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](actions/checkout@11bd719...08c6903) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: 5.0.0 dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump korthout/backport-action from 3.2.1 to 3.3.0 (#1944) Bumps [korthout/backport-action](https://github.com/korthout/backport-action) from 3.2.1 to 3.3.0. - [Release notes](https://github.com/korthout/backport-action/releases) - [Commits](korthout/backport-action@0193454...ca4972a) --- updated-dependencies: - dependency-name: korthout/backport-action dependency-version: 3.3.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#1936) updates: - [github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0](pre-commit/pre-commit-hooks@v5.0.0...v6.0.0) - [github.com/astral-sh/ruff-pre-commit: v0.12.7 → v0.12.8](astral-sh/ruff-pre-commit@v0.12.7...v0.12.8) - [github.com/shellcheck-py/shellcheck-py: v0.10.0.1 → v0.11.0.1](shellcheck-py/shellcheck-py@v0.10.0.1...v0.11.0.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * Update latest-pytorch-support.yml (#1950) move to pyproject.toml * [pre-commit.ci] pre-commit autoupdate (#1949) updates: - [github.com/astral-sh/ruff-pre-commit: v0.12.8 → v0.12.9](astral-sh/ruff-pre-commit@v0.12.8...v0.12.9) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * Bump version to 1.6.0 * Update pytorch image in Dockerfile.release and Dockerfile.source to version * update coverage, add link to issue search * add FFT, masked arrays * Update authors and contributors in CITATION.cff * fix: typo in release drafter * Updated Changelog * changelog highlights * Update micro version to 0 * Update CHANGELOG.md * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: StepSecurity Bot <bot@stepsecurity.io> Co-authored-by: Fabian Hoppe <112093564+mrfh92@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> Co-authored-by: jolemse <35252911+jolemse@users.noreply.github.com> Co-authored-by: Hoppe <mrhf92@gmail.com> Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> Co-authored-by: Marc-Jindra <m.jindra@fz-juelich.de> Co-authored-by: Hakdag97 <72792786+Hakdag97@users.noreply.github.com> Co-authored-by: Michael Tarnawa <18899420+mtar@users.noreply.github.com> Co-authored-by: Till Korten <webmaster@korten.at> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Michael Tarnawa <m.tarnawa@fz-juelich.de> Co-authored-by: StepSecurity Bot <bot@stepsecurity.io> Co-authored-by: Berkant <51971304+Berkant03@users.noreply.github.com> Co-authored-by: Lukas Scheib <ls.login.sl@gmail.com> Co-authored-by: Lukas Scheib <146953413+LScheib@users.noreply.github.com> Co-authored-by: lolacaro <carola.fischer.science@gmail.com> Co-authored-by: Björn Hagemeier <b.hagemeier@fz-juelich.de> Co-authored-by: Heat Release Bot <>
JuanPedroGHM
added a commit
that referenced
this pull request
Jan 9, 2026
* Heat 1.6.0 - Release (#1957) * Update heat/core/io.py Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * added test for dndarray.info * added tests for two uncovered exception lines * one additional line from DMD covered * one more line in DMD covered * debugging * build(deps): bump actions/setup-python from 5.4.0 to 5.5.0 Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5.4.0 to 5.5.0. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@4237552...8d9ed9a) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/PyCQA/flake8: 7.1.2 → 7.2.0](PyCQA/flake8@7.1.2...7.2.0) * build(deps): bump github/codeql-action from 3.28.12 to 3.28.13 Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.28.12 to 3.28.13. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@5f8171a...1b549b9) --- updated-dependencies: - dependency-name: github/codeql-action dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * further work on eigh * eigh completed for split = 0 * flake8 * tests for eigh, now split=none,0,1 * build(deps): bump step-security/harden-runner from 2.11.0 to 2.11.1 (#1851) Bumps [step-security/harden-runner](https://github.com/step-security/harden-runner) from 2.11.0 to 2.11.1. - [Release notes](https://github.com/step-security/harden-runner/releases) - [Commits](step-security/harden-runner@4d991eb...c6295a6) --- updated-dependencies: - dependency-name: step-security/harden-runner dependency-version: 2.11.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump actions/dependency-review-action from 4.5.0 to 4.6.0 (#1850) Bumps [actions/dependency-review-action](https://github.com/actions/dependency-review-action) from 4.5.0 to 4.6.0. - [Release notes](https://github.com/actions/dependency-review-action/releases) - [Commits](actions/dependency-review-action@3b139cf...ce3cf95) --- updated-dependencies: - dependency-name: actions/dependency-review-action dependency-version: 4.6.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * minor modifications due to Copilot's Review * added SVD for general case * reformatting * tests for SVD * tests for SVD completed * added module _config in core which is intended to handle MPI, CUDA, and ROCm versioning * added variable GPU_AWARE_MPI * added MPICH * changed method info into __repr__ * moved __repr__ to printing module * removed dead code * restructuring of tests * added further test to DMDc * small typo corrected * adapted tolerances for last test; errors grow w.r.t. timesteps (is in the nature of DMD), so largest number of procs determines tolerance * Update test_dmd.py lower tolerances for the AMD-runner * dummy commit since sth was wrong with pre-commit * corrected tests * debugging of tests * Remove unnecessary contiguous calls (#1831) * removed contiguous calls from manipulations.py * removed the contiguous calls from linalg/qr.py * removed unnecessary contiguous call in factories.py * removed some more unnecessary contiguous calls * reinstate contiguous() calls if needed * removed the contiguous calls from linalg/qr.py * reinstate setting Q_buf to Q_curr --------- Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * build(deps): bump github/codeql-action from 3.28.13 to 3.28.15 Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.28.13 to 3.28.15. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@1b549b9...45775bd) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.28.15 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * removed debugging prints that were forgotten before merging into main * subTest'ified the zarr tests, added some strange exception handling that is likely necessary to accomodate zarr-versions compatible with Python 3.10 * small bug fix * bugfix in eigh * removed unneccesary numpy import * changed representation string according to review * debugging of memory consumption in Polar * bug fixes for devices in polar and eigh * bugfixes for certain device constellations * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update README.md * Support latest PyTorch release * Make unit tests compatible with NumPy 2.x (#1826) * changed row_stack to vstack for numpy >= 2.0.0 * Changed the numpy version check to the numpy suggested method * Changed numpy version requirement * fixed DeprecationWarning from missing axes for np.fft.fftn * Fixed one __array_wrap__ DeprecationWarning * Stopped testing cross of vector axes with 2 elements for numpy >= 2.0 * changed requirements to avoid errors with numpy >= 2 * Using Python 3.10 for RecievePR * changed python-version to '3.10' because 3.10 was interpreted as 3.1 * changed ci.yaml to exclude python 3.9 * Fixed two DeprecationWarnings of np.cross() by adding a third dimension with zeros * Fixed the last np.cross() warning by performing the operation manually * changed dtype of np.cross() to float32 --------- Co-authored-by: Fabian Hoppe <112093564+mrfh92@users.noreply.github.com> Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * build(deps): bump actions/setup-python from 5.5.0 to 5.6.0 (#1863) * build(deps): bump actions/setup-python from 5.5.0 to 5.6.0 Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5.5.0 to 5.6.0. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@8d9ed9a...a26af69) --- updated-dependencies: - dependency-name: actions/setup-python dependency-version: 5.6.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * Debugging --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * build(deps): bump docker/build-push-action from 6.15.0 to 6.16.0 (#1860) Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.15.0 to 6.16.0. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](docker/build-push-action@471d1dc...14487ce) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-version: 6.16.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump step-security/harden-runner from 2.11.1 to 2.12.0 (#1861) Bumps [step-security/harden-runner](https://github.com/step-security/harden-runner) from 2.11.1 to 2.12.0. - [Release notes](https://github.com/step-security/harden-runner/releases) - [Commits](step-security/harden-runner@c6295a6...0634a26) --- updated-dependencies: - dependency-name: step-security/harden-runner dependency-version: 2.12.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump github/codeql-action from 3.28.15 to 3.28.17 (#1866) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.28.15 to 3.28.17. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@45775bd...60168ef) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.28.17 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump actions/dependency-review-action from 4.6.0 to 4.7.0 Bumps [actions/dependency-review-action](https://github.com/actions/dependency-review-action) from 4.6.0 to 4.7.0. - [Release notes](https://github.com/actions/dependency-review-action/releases) - [Commits](actions/dependency-review-action@ce3cf95...38ecb5b) --- updated-dependencies: - dependency-name: actions/dependency-review-action dependency-version: 4.7.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * added benchmarks for eigh, svd, and rsvd * dummy commit to trigger benchmark runs * Support latest PyTorch release * changed torchvision version to <0.22.1 * retrigger checks * build(deps): bump github/codeql-action from 3.28.17 to 3.28.18 Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.28.17 to 3.28.18. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@60168ef...ff0a06e) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.28.18 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * build(deps): bump docker/build-push-action from 6.16.0 to 6.17.0 Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.16.0 to 6.17.0. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](docker/build-push-action@14487ce...1dc7386) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-version: 6.17.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * build(deps): bump actions/dependency-review-action from 4.7.0 to 4.7.1 Bumps [actions/dependency-review-action](https://github.com/actions/dependency-review-action) from 4.7.0 to 4.7.1. - [Release notes](https://github.com/actions/dependency-review-action/releases) - [Commits](actions/dependency-review-action@38ecb5b...da24556) --- updated-dependencies: - dependency-name: actions/dependency-review-action dependency-version: 4.7.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * RTD Notebook gallery and profiling notebook with perun. (#1867) * docs: notebook gallery in rtd * docs: missing makefiles * docs: reverted changes to gitignore * haicore notebook setup * ompi in readthedocs build * correct apt package for mpi * docs: replaced small bodies dataset with digits from sklearn (boring, but easier to access on the long term) * perun notebook * wrong cell type * added pytorch 2.7 to ci workflow * docs: post practice run fixes * notebook thumbnails, formatting and corrections for tutorial * forgot to uncomment autoapi * build(deps): bump github/codeql-action from 3.28.18 to 3.28.19 (#1881) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.28.18 to 3.28.19. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@ff0a06e...fca7ace) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.28.19 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump docker/build-push-action from 6.17.0 to 6.18.0 (#1877) Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 6.17.0 to 6.18.0. - [Release notes](https://github.com/docker/build-push-action/releases) - [Commits](docker/build-push-action@1dc7386...2634353) --- updated-dependencies: - dependency-name: docker/build-push-action dependency-version: 6.18.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump ossf/scorecard-action from 2.4.1 to 2.4.2 (#1878) Bumps [ossf/scorecard-action](https://github.com/ossf/scorecard-action) from 2.4.1 to 2.4.2. - [Release notes](https://github.com/ossf/scorecard-action/releases) - [Changelog](https://github.com/ossf/scorecard-action/blob/main/RELEASE.md) - [Commits](ossf/scorecard-action@f49aabe...05b42c6) --- updated-dependencies: - dependency-name: ossf/scorecard-action dependency-version: 2.4.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump step-security/harden-runner from 2.12.0 to 2.12.1 Bumps [step-security/harden-runner](https://github.com/step-security/harden-runner) from 2.12.0 to 2.12.1. - [Release notes](https://github.com/step-security/harden-runner/releases) - [Commits](step-security/harden-runner@0634a26...002fdce) --- updated-dependencies: - dependency-name: step-security/harden-runner dependency-version: 2.12.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * build(deps): bump github/codeql-action from 3.28.19 to 3.29.0 Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.28.19 to 3.29.0. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@fca7ace...ce28f5b) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.29.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * Add special methods for operations in NumPy * add tests for NumPy related array methods * fix variable name * Exit installation if conda environment cannot be activated (#1880) * exit 0_setup_conda.sh if environment cannot be activated otherwise the script might install into the base environment * exit 0_setup_pip.sh if environment cannot be activated --------- Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> * fix item access * add contiguous call again * same as before * [pre-commit.ci] pre-commit autoupdate (#1894) updates: - [github.com/PyCQA/flake8: 7.2.0 → 7.3.0](PyCQA/flake8@7.2.0...7.3.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * bugfix in rSVD for the case the rank is smaller than number of processes * build(deps): bump github/codeql-action from 3.29.0 to 3.29.1 Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.29.0 to 3.29.1. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@ce28f5b...39edc49) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.29.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * resolved bug in rSVD, actualle one-process QR * Support PyTorch 2.7.1 (#1883) * Support latest PyTorch release * Update ci.yaml pytorch: add v2.2, drop v1.11 * debugging test_lasso * Support latest PyTorch release * Update bug_report.yml Add latest versions for options * update torchvision * do not test latest torch in matrix * pin zarr version * remove dead code * pin zarr to 3.0.8 * add back latest pytorch to matrix * edit PR body * Update ci.yaml --------- Co-authored-by: ClaudiaComito <39374113+ClaudiaComito@users.noreply.github.com> Co-authored-by: Michael Tarnawa <m.tarnawa@fz-juelich.de> Co-authored-by: Michael Tarnawa <18899420+mtar@users.noreply.github.com> * build(deps): bump docker/setup-buildx-action from 3.10.0 to 3.11.1 Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 3.10.0 to 3.11.1. - [Release notes](https://github.com/docker/setup-buildx-action/releases) - [Commits](docker/setup-buildx-action@b5ca514...e468171) --- updated-dependencies: - dependency-name: docker/setup-buildx-action dependency-version: 3.11.1 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * Update polar.py * Revert "build(deps): bump docker/setup-buildx-action from 3.10.0 to 3.11.1" (#1908) * support torch_function (#1895) Co-authored-by: Fabian Hoppe <112093564+mrfh92@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * Features/1845 Update citations (#1846) * Update README.md: added citation possibilities * Update README.md: link to ZENODO * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update README.md * Update README.md * Update README.md --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * Transition to pyproject.toml, Ruff, and mypy (#1832) * Support latest PyTorch release * Support latest PyTorch release * retrigger checks * wip: toml, ruff, mypy and cli * ci: better mypy error filter (down to 3041) * ci: mypy in list of dev deps * ci: skiping mypy for now * dependency specification * missing argument description for permute method * fixed dynamic version in pyproject.toml * properly skipping mypy in the pre-commit.ci * fixed dependencies, removed references to python 3.9, added python 3.13 * doc -> docs * fixed tests * cli tests * Update .github/ISSUE_TEMPLATE/bug_report.yml Co-authored-by: Michael Tarnawa <18899420+mtar@users.noreply.github.com> * removed problematic pytorch version?! * consistency is important * did not work * vulnerabitliy removal, other changes to toml * It's not working :( * fixing tests * Update .pre-commit-config.yaml * fix: cli does not change the default device * fix: support for older pytorch version on the cli, limit zarr package version * Update pytorch exclude with py-3.13 --------- Co-authored-by: ClaudiaComito <39374113+ClaudiaComito@users.noreply.github.com> Co-authored-by: Marc-Jindra <m.jindra@fz-juelich.de> Co-authored-by: Michael Tarnawa <18899420+mtar@users.noreply.github.com> * build(deps): bump docker/setup-buildx-action from 3.10.0 to 3.11.1 (#1911) Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 3.10.0 to 3.11.1. - [Release notes](https://github.com/docker/setup-buildx-action/releases) - [Commits](docker/setup-buildx-action@b5ca514...e468171) --- updated-dependencies: - dependency-name: docker/setup-buildx-action dependency-version: 3.11.1 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump github/codeql-action from 3.29.1 to 3.29.2 (#1910) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.29.1 to 3.29.2. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@39edc49...181d5ee) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.29.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump step-security/harden-runner from 2.12.1 to 2.12.2 (#1909) Bumps [step-security/harden-runner](https://github.com/step-security/harden-runner) from 2.12.1 to 2.12.2. - [Release notes](https://github.com/step-security/harden-runner/releases) - [Commits](step-security/harden-runner@002fdce...6c439dc) --- updated-dependencies: - dependency-name: step-security/harden-runner dependency-version: 2.12.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Apply suggestions from code review Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * took review into account * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * pre-commit stuff * [pre-commit.ci] pre-commit autoupdate (#1912) updates: - [github.com/astral-sh/ruff-pre-commit: v0.11.13 → v0.12.3](astral-sh/ruff-pre-commit@v0.11.13...v0.12.3) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * Updated release_prep.yml to incorporate up-to-date Dockerfile Pytorch versions (#1903) * Create update_docker.yml * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update release-prep.yml Added the update functionality of the Dockerfile.source and Dockerfile.release Pytorch Image versions. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Removed update_docker.yml since the functionality was moved to release prep --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * [StepSecurity] Apply security best practices (#1891) * [StepSecurity] Apply security best practices Signed-off-by: StepSecurity Bot <bot@stepsecurity.io> * Test with shellcheck-py * Update .pre-commit-config.yaml * shellcheck updates * Update build_and_push.sh * Update increment_version.sh * Update increment_version.sh * Update build_and_push.sh * Update test_nvidia_image_haicore_enroot.sh * Update test_nvidia_image_haicore_enroot.sh * Update build_and_push.sh * Update 0_setup_pip.sh --------- Signed-off-by: StepSecurity Bot <bot@stepsecurity.io> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * build(deps): bump korthout/backport-action from 3.2.0 to 3.2.1 Bumps [korthout/backport-action](https://github.com/korthout/backport-action) from 3.2.0 to 3.2.1. - [Release notes](https://github.com/korthout/backport-action/releases) - [Commits](korthout/backport-action@436145e...0193454) --- updated-dependencies: - dependency-name: korthout/backport-action dependency-version: 3.2.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * build(deps): bump step-security/harden-runner from 2.12.1 to 2.13.0 Bumps [step-security/harden-runner](https://github.com/step-security/harden-runner) from 2.12.1 to 2.13.0. - [Release notes](https://github.com/step-security/harden-runner/releases) - [Commits](step-security/harden-runner@v2.12.1...ec9f2d5) --- updated-dependencies: - dependency-name: step-security/harden-runner dependency-version: 2.13.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/pre-commit/mirrors-mypy: v1.16.1 → v1.17.0](pre-commit/mirrors-mypy@v1.16.1...v1.17.0) - [github.com/astral-sh/ruff-pre-commit: v0.12.3 → v0.12.4](astral-sh/ruff-pre-commit@v0.12.3...v0.12.4) - [github.com/gitleaks/gitleaks: v8.16.3 → v8.28.0](gitleaks/gitleaks@v8.16.3...v8.28.0) * Fix ValueError in save_zarr by conditional handling of chunks argument Fixes error when calling zarr.create by only passing chunks as a list if not None. * Unfix zarr version in pyproject.toml to test CI job `test_amd` * Add note in docstring of save_zarr() * build(deps): bump tj-actions/branch-names from 8.2.1 to 9.0.1 Bumps [tj-actions/branch-names](https://github.com/tj-actions/branch-names) from 8.2.1 to 9.0.1. - [Release notes](https://github.com/tj-actions/branch-names/releases) - [Changelog](https://github.com/tj-actions/branch-names/blob/main/HISTORY.md) - [Commits](tj-actions/branch-names@dde14ac...386e117) --- updated-dependencies: - dependency-name: tj-actions/branch-names dependency-version: 9.0.1 dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> * build(deps): bump github/codeql-action from 3.29.2 to 3.29.4 Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.29.2 to 3.29.4. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@181d5ee...4e828ff) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.29.4 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * Setuptools build fix on pytproject.toml (#1919) * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/astral-sh/ruff-pre-commit: v0.12.4 → v0.12.5](astral-sh/ruff-pre-commit@v0.12.4...v0.12.5) * Stride argument for convolution (#1865) * Add: enable stride as input option for convolution Belongs to Issue 1755 Changes include - stride as optional input - stride in docstring (except for output dim computations and as example) - raise ValueError for incorrect option (stride < 1) and combinations (stride > 1 and mode = 'same') * Add: Failing stride tests in test_signal.py - Added correct results for odd and even kernel - Added calls for convolution with stride=2 except with exception for mode `same` - Covers is_mps true and false - Stopped at tests for large distributed signals * Add: Pass stride tests for standard cases Belongs to Issue 1755 - edge cases and batch-processing not yet implemented or tested - Fix test error - Implement stride to pass tests - Write convolution_stride.py script for debugging purposes, will be removed later * Add: test for large signals with stride Belongs to Issue 1755 - passes * Add: Test cases until batch Belongs to issue 1755 - Passes tests * Add: Failing tests for batch convolution with stride Belongs to Issue 1755 * Add: batch processing with stride Belongs to Issue 1755 - Added stride to conv1D call in batch_convolution - Passes tests * Remove: Remove script to test convolution with stride * Update: Docstring of convolution Belongs to Issue 1755 - Correct stride information - Add examples * Fail: Tests fail for mpirun -n3 ... - Issue with halo size - Problem marked in code - Not solved * Update: Split stride tests - Different configurations in different tests functions - If process number == 1: all pass - If multiple process < 3 (because tested only then), 5 fail - This needs to be fixed, likely fails due to wrong halo in presence of stride * Add: Enable stride on distributed arrays but not kernels Adjust signal on each rank such that it starts with the next kernel according to stride - Added the compution of starting values for each rank - Avoid doubles for even and odd kernels Halo size computation is independent of stride Added a script for debugging, will be removed Ideas: generalize it for stride 1 (should work out of the box) To do: Adapt for distributed kernels * Add: Distributed Kernels and optimized start index computation Optimized start index computation: - Remove global index array - Use lshap map and simple modulo operation only Distributed kernels - Any stride > 1 is a subset of the solution for stride 1 - Not the most efficient but at least functional * Fix: Improve test coverage Still missing - Cuda code bits - else statement beginning line 229 * Delete: conv_test.py Test script no longer needed * Add: Add benchmarks for signal.py * Add: script to test benchmark - empty so far * Fix: Benchmarks - Fix run_signal_benchmarks - Add run_signal_benchmarks to main.py Remove: print statements from convolution in signal.py * Fix: benchmarks/cb/signal.py - add () to monitor decorator of perun * Fix: Rename signal.py to avoid clash with python3.12 signal - change signal.py to heat_signal.py * Fix: Adjust array numbers for benchmarking * Remove: benchmark script from scripts/ * Fix: Benchmarking signal.py and testing signal.py - Benchmark improved - removed import pytest from test_signal.py * Fix: test_signal.py batch convolution with stride - Stride was not passed as a single value but different values for different ranks - Solution: Do not randomly create stride values but use fixed values * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix: test_convolution-stride_large_signal_and_kernel_modes - Remove torch arrays - Instead work with np.convolve similar to test without stride * Fix: Add device for empty torch tensors - Stride test fails for large arrays - Error message says, that device does not match - Due to large stride, potentially empty tensor creation -> add device to that tensor created * Fix: torch_device instead of device - when empty tensor is called, use torch_device * Fix: Missed .device to previous commit * Fix: torch device not accessible - instead use str(ht_array.device) - Use signal.device to get correct rank --------- Co-authored-by: Fabian Hoppe <112093564+mrfh92@users.noreply.github.com> Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> * build(deps): bump tj-actions/branch-names from 9.0.1 to 9.0.2 (#1930) Bumps [tj-actions/branch-names](https://github.com/tj-actions/branch-names) from 9.0.1 to 9.0.2. - [Release notes](https://github.com/tj-actions/branch-names/releases) - [Changelog](https://github.com/tj-actions/branch-names/blob/main/HISTORY.md) - [Commits](tj-actions/branch-names@386e117...5250492) --- updated-dependencies: - dependency-name: tj-actions/branch-names dependency-version: 9.0.2 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump github/codeql-action from 3.29.4 to 3.29.8 (#1933) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.29.4 to 3.29.8. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@4e828ff...76621b6) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.29.8 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump docker/login-action from 3.4.0 to 3.5.0 (#1934) Bumps [docker/login-action](https://github.com/docker/login-action) from 3.4.0 to 3.5.0. - [Release notes](https://github.com/docker/login-action/releases) - [Commits](docker/login-action@74a5d14...184bdaa) --- updated-dependencies: - dependency-name: docker/login-action dependency-version: 3.5.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#1931) updates: - [github.com/pre-commit/mirrors-mypy: v1.17.0 → v1.17.1](pre-commit/mirrors-mypy@v1.17.0...v1.17.1) - [github.com/astral-sh/ruff-pre-commit: v0.12.5 → v0.12.7](astral-sh/ruff-pre-commit@v0.12.5...v0.12.7) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> * Update CODE_OF_CONDUCT.md New email for reporting * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * build(deps): bump github/codeql-action from 3.29.8 to 3.29.9 (#1943) Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3.29.8 to 3.29.9. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@76621b6...df55935) --- updated-dependencies: - dependency-name: github/codeql-action dependency-version: 3.29.9 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump actions/checkout from 4.2.2 to 5.0.0 (#1942) Bumps [actions/checkout](https://github.com/actions/checkout) from 4.2.2 to 5.0.0. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](actions/checkout@11bd719...08c6903) --- updated-dependencies: - dependency-name: actions/checkout dependency-version: 5.0.0 dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * build(deps): bump korthout/backport-action from 3.2.1 to 3.3.0 (#1944) Bumps [korthout/backport-action](https://github.com/korthout/backport-action) from 3.2.1 to 3.3.0. - [Release notes](https://github.com/korthout/backport-action/releases) - [Commits](korthout/backport-action@0193454...ca4972a) --- updated-dependencies: - dependency-name: korthout/backport-action dependency-version: 3.3.0 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * [pre-commit.ci] pre-commit autoupdate (#1936) updates: - [github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0](pre-commit/pre-commit-hooks@v5.0.0...v6.0.0) - [github.com/astral-sh/ruff-pre-commit: v0.12.7 → v0.12.8](astral-sh/ruff-pre-commit@v0.12.7...v0.12.8) - [github.com/shellcheck-py/shellcheck-py: v0.10.0.1 → v0.11.0.1](shellcheck-py/shellcheck-py@v0.10.0.1...v0.11.0.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * Update latest-pytorch-support.yml (#1950) move to pyproject.toml * [pre-commit.ci] pre-commit autoupdate (#1949) updates: - [github.com/astral-sh/ruff-pre-commit: v0.12.8 → v0.12.9](astral-sh/ruff-pre-commit@v0.12.8...v0.12.9) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * Bump version to 1.6.0 * Update pytorch image in Dockerfile.release and Dockerfile.source to version * update coverage, add link to issue search * add FFT, masked arrays * Update authors and contributors in CITATION.cff * fix: typo in release drafter * Updated Changelog * changelog highlights * Update micro version to 0 * Update CHANGELOG.md * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: StepSecurity Bot <bot@stepsecurity.io> Co-authored-by: Fabian Hoppe <112093564+mrfh92@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> Co-authored-by: jolemse <35252911+jolemse@users.noreply.github.com> Co-authored-by: Hoppe <mrhf92@gmail.com> Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> Co-authored-by: Marc-Jindra <m.jindra@fz-juelich.de> Co-authored-by: Hakdag97 <72792786+Hakdag97@users.noreply.github.com> Co-authored-by: Michael Tarnawa <18899420+mtar@users.noreply.github.com> Co-authored-by: Till Korten <webmaster@korten.at> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Michael Tarnawa <m.tarnawa@fz-juelich.de> Co-authored-by: StepSecurity Bot <bot@stepsecurity.io> Co-authored-by: Berkant <51971304+Berkant03@users.noreply.github.com> Co-authored-by: Lukas Scheib <ls.login.sl@gmail.com> Co-authored-by: Lukas Scheib <146953413+LScheib@users.noreply.github.com> Co-authored-by: lolacaro <carola.fischer.science@gmail.com> Co-authored-by: Björn Hagemeier <b.hagemeier@fz-juelich.de> Co-authored-by: Heat Release Bot <> * Sturdier MPI Check (#1926) (#1979) * sturdier mpi check * GPU_AWARE as relevant global check, checks can depend on version now * gpu aware compatiblity changes * wip: communication layer fixes for gpu_aware_mpi * _moveToCompDevice function * fix: disabled OpenMPI cuda awareness due to unreliable tests and benchmarks --------- (cherry picked from commit 3637662) Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> Co-authored-by: Fabian Hoppe <112093564+mrfh92@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * Bugs/1990 Fix handling of zarr groups (#1991) (#1999) * introduce variable to handle zarr groups * expand tests * edit docs * do not test with float64 on MPS * files housekeeping on MPS * load zarr variable from multiple dirs * fix path reading * fix import * expand docs * set device * fix dtype on empty ranks, balance output, refactor * adapt tests * Apply suggestions from code review * expand tests * fix deadlock at split sanitation * enable dtype setting * expand tests --------- (cherry picked from commit dc4bd1c) Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * Set correct dtype when loading and saving hdf5 (#2014) (#2024) * fixed load_hdf5 * fixed save_hdf5 * fixed different behavior in tests * test torch dtype for save_hdf5 --------- (cherry picked from commit 678cd47) Co-authored-by: Marc-Jindra <m.jindra@fz-juelich.de> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * Supporting negative indices for flip operations (#2030) (#2050) * Converting negative indices * use sanitize_axis * Added tests * edit docs --------- (cherry picked from commit 3c0bc27) Co-authored-by: Marc-Jindra <m.jindra@fz-juelich.de> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * Bump version to 1.7.0 * Update pytorch image in Dockerfile.release and Dockerfile.source to version * prep for 1.7.0 * Add device parameter to QR output arrays (#2051) Update QR decomposition to include device parameter for R and Q arrays. (cherry picked from commit bd5df7c) Co-authored-by: Giovanni Pederiva <g.pederiva@fz-juelich.de> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * Handling of unknown MPI Libraries (#2032) (#2060) * fix: Added 'other' as option for mpi library * fix: corrected parastation configuration * Update heat/core/_config.py --------- (cherry picked from commit 50080e0) Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> * changelog * Update bug_report.yml * final changelog, citation and readme * fix: removed p3.14 tests * fix: dev version number --------- Signed-off-by: dependabot[bot] <support@github.com> Signed-off-by: StepSecurity Bot <bot@stepsecurity.io> Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com> Co-authored-by: Fabian Hoppe <112093564+mrfh92@users.noreply.github.com> Co-authored-by: Claudia Comito <39374113+ClaudiaComito@users.noreply.github.com> Co-authored-by: jolemse <35252911+jolemse@users.noreply.github.com> Co-authored-by: Hoppe <mrhf92@gmail.com> Co-authored-by: Juan Pedro Gutiérrez Hermosillo Muriedas <juanpedroghm@gmail.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> Co-authored-by: Marc-Jindra <m.jindra@fz-juelich.de> Co-authored-by: Hakdag97 <72792786+Hakdag97@users.noreply.github.com> Co-authored-by: Michael Tarnawa <18899420+mtar@users.noreply.github.com> Co-authored-by: Till Korten <webmaster@korten.at> Co-authored-by: Michael Tarnawa <m.tarnawa@fz-juelich.de> Co-authored-by: StepSecurity Bot <bot@stepsecurity.io> Co-authored-by: Berkant <51971304+Berkant03@users.noreply.github.com> Co-authored-by: Lukas Scheib <ls.login.sl@gmail.com> Co-authored-by: Lukas Scheib <146953413+LScheib@users.noreply.github.com> Co-authored-by: lolacaro <carola.fischer.science@gmail.com> Co-authored-by: Björn Hagemeier <b.hagemeier@fz-juelich.de> Co-authored-by: Heat Release Bot <> Co-authored-by: Giovanni Pederiva <g.pederiva@fz-juelich.de>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Bumps docker/build-push-action from 6.15.0 to 6.16.0.
Release notes
Sourced from docker/build-push-action's releases.
Commits
14487ceMerge pull request #1343 from crazy-max/fix-no-default-attest0ec9126Merge pull request #1366 from crazy-max/pr-assign-authorb749522pr-assign-author workflowc566248Merge pull request #1363 from crazy-max/fix-codecov13275ddci: fix missing source for codecov67dc78bMerge pull request #1361 from mschoettle/patch-10760504docs: add validating build configuration example1c198f4chore: update generated content288d9e2handle no default attestations env var88844b9Merge pull request #1353 from crazy-max/summary-secret-keysDependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting
@dependabot rebase.Dependabot commands and options
You can trigger Dependabot actions by commenting on this PR:
@dependabot rebasewill rebase this PR@dependabot recreatewill recreate this PR, overwriting any edits that have been made to it@dependabot mergewill merge this PR after your CI passes on it@dependabot squash and mergewill squash and merge this PR after your CI passes on it@dependabot cancel mergewill cancel a previously requested merge and block automerging@dependabot reopenwill reopen this PR if it is closed@dependabot closewill close this PR and stop Dependabot recreating it. You can achieve the same result by closing it manually@dependabot show <dependency name> ignore conditionswill show all of the ignore conditions of the specified dependency@dependabot ignore this major versionwill close this PR and stop Dependabot creating any more for this major version (unless you reopen the PR or upgrade to it yourself)@dependabot ignore this minor versionwill close this PR and stop Dependabot creating any more for this minor version (unless you reopen the PR or upgrade to it yourself)@dependabot ignore this dependencywill close this PR and stop Dependabot creating any more for this dependency (unless you reopen the PR or upgrade to it yourself)