fix comma

sopa/cli/patchify.py

@@ -177,13 +177,11 @@ def _transcript_segmentation(
         unassigned_value (int): "If cell-key is provided, this is the value given to transcripts that are not inside any cell (if it's already 0, don't provide this argument)"
 
     """
-    from sopa._constants import SopaFiles, SopaKeys
+    from sopa._constants import SopaFiles
     from sopa._sdata import get_key
     from sopa.io.standardize import read_zarr_standardized, sanity_check
     from sopa.patches import Patches2D
 
-    from .utils import _default_boundary_dir
-
     sdata = read_zarr_standardized(sdata_path)
     sanity_check(sdata)
 

workflow/Snakefile

@@ -82,7 +82,7 @@ checkpoint patchify_comseg:
         "sopa"
     shell:
         """
-        sopa patchify comseg {paths.sdata_path} {params.args_patchify} {params.args_comseg} 
+        sopa patchify comseg {paths.sdata_path} {params.args_patchify} {params.args_comseg}
         """
 
 rule patch_segmentation_cellpose:
@@ -132,7 +132,7 @@ rule patch_segmentation_comseg:
         mem_mb=128_000,
     shell:
         """
-        sopa segmentation comseg {paths.sdata_path} --patch-dir {paths.smk_comseg_temp_dir} --patch-index {wildcards.index} 
+        sopa segmentation comseg {paths.sdata_path} --patch-dir {paths.smk_comseg_temp_dir} --patch-index {wildcards.index}
         """
 
 def get_input_resolve(name, dirs=False):