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Remove database and host components. #576

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Jul 30, 2021
Merged

Remove database and host components. #576

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384147f
Remove database and host components.
bdice Jul 23, 2021
79cb283
Update docs/setup files.
bdice Jul 23, 2021
8c25029
Remove utility function.
bdice Jul 23, 2021
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12 changes: 1 addition & 11 deletions doc/installation.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -48,12 +48,7 @@ To upgrade the package, simply execute the same command with the ``--upgrade`` o

$ pip install signac --user --upgrade

Consider installing optional dependencies:

.. code:: bash

$ pip install pymongo passlib bcrypt --user

Consider installing :ref:`optional dependencies <optional_dependencies>`.

Source Code Installation
========================
Expand All @@ -80,10 +75,5 @@ Extra features with dependencies:

.. glossary::

MongoDB database backend
required: ``pymongo``

recommended: ``passlib``, ``bcrypt``

HDF5 integration
required: ``h5py``
4 changes: 2 additions & 2 deletions setup.cfg
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Expand Up @@ -17,8 +17,8 @@ select = E,F,W
ignore = E123,E126,E203,E226,E241,E704,W503,W504

[pydocstyle]
match = ^((?!\.sync-zenodo-metadata|setup|benchmark|connection|crypt|host|indexing).)*\.py$
match-dir = ^((?!\.|tests|configobj|db).)*$
match = ^((?!\.sync-zenodo-metadata|setup|benchmark|indexing).)*\.py$
match-dir = ^((?!\.|tests|configobj).)*$
ignore-decorators = "deprecated"
add-ignore = D105, D107, D203, D204, D213

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2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -64,6 +64,6 @@
# Supported versions are determined according to NEP 29.
# https://numpy.org/neps/nep-0029-deprecation_policy.html
python_requires=">=3.6, <4",
extras_require={"db": ["pymongo>=3.0"], "h5": ["h5py"]},
extras_require={"h5": ["h5py"]},
entry_points={"console_scripts": ["signac = signac.__main__:main"]},
)
5 changes: 1 addition & 4 deletions signac/__init__.py
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Expand Up @@ -9,7 +9,7 @@
collectively accessible.
"""

from . import cite, contrib, db, errors, sync, testing, warnings
from . import cite, contrib, errors, sync, testing, warnings
from .contrib import (
Collection,
MainCrawler,
Expand All @@ -30,7 +30,6 @@
init_project,
)
from .core.h5store import H5Store, H5StoreManager
from .db import get_database
from .diff import diff_jobs
from .synced_collections.backends.collection_json import (
BufferedJSONAttrDict as JSONDict,
Expand All @@ -47,7 +46,6 @@
__all__ = [
"__version__",
"contrib",
"db",
"errors",
"warnings",
"sync",
Expand All @@ -58,7 +56,6 @@
"init_project",
"get_job",
"diff_jobs",
"get_database",
"fetch",
"export_one",
"export",
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