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Add authors to all workflows #291
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42d2e48
rename test file
lldelisle 16c8b43
start changing dockstore files
lldelisle ac6570b
finish changing dockstore files
lldelisle ad008ff
fix gmx_solvate
lldelisle 6fb518a
use another link for input test data
lldelisle ef87050
revert changes for the three workflows failing
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9 changes: 8 additions & 1 deletion
9
workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/.dockstore.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,14 @@ | ||
| version: 1.2 | ||
| workflows: | ||
| - name: main | ||
| primaryDescriptorPath: /Assembly-Hifi-HiC-phasing-VGP4.ga | ||
| subclass: Galaxy | ||
| publish: true | ||
| primaryDescriptorPath: /Assembly-Hifi-HiC-phasing-VGP4.ga | ||
| testParameterFiles: | ||
| - /Assembly-Hifi-HiC-phasing-VGP4-tests.yml | ||
| authors: | ||
| - name: Galaxy | ||
| - name: VGP | ||
| url: https://vertebrategenomeproject.org | ||
| - name: Delphine Lariviere | ||
| orcid: 0000-0001-6421-3484 |
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4 changes: 4 additions & 0 deletions
4
workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/CHANGELOG.md
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,9 @@ | ||
| # Changelog | ||
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| ## [0.1.7] 2023-11-20 | ||
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| - Fix author in dockstore | ||
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| ## [0.1.5] 2023-11-15 | ||
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| ### Added | ||
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7 changes: 6 additions & 1 deletion
7
workflows/VGP-assembly-v2/Assembly-Hifi-Trio-phasing-VGP5/.dockstore.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,12 @@ | ||
| version: 1.2 | ||
| workflows: | ||
| - name: main | ||
| primaryDescriptorPath: /Assembly-Hifi-Trio-phasing-VGP5.ga | ||
| subclass: Galaxy | ||
| publish: true | ||
| primaryDescriptorPath: /Assembly-Hifi-Trio-phasing-VGP5.ga | ||
| testParameterFiles: | ||
| - /Assembly-Hifi-Trio-phasing-VGP5-tests.yml | ||
| authors: | ||
| - name: Galaxy | ||
| - name: VGP | ||
| url: https://vertebrategenomeproject.org |
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4 changes: 4 additions & 0 deletions
4
workflows/VGP-assembly-v2/Assembly-Hifi-Trio-phasing-VGP5/CHANGELOG.md
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7 changes: 6 additions & 1 deletion
7
workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3/.dockstore.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,12 @@ | ||
| version: 1.2 | ||
| workflows: | ||
| - name: main | ||
| primaryDescriptorPath: /Assembly-Hifi-only-VGP3.ga | ||
| subclass: Galaxy | ||
| publish: true | ||
| primaryDescriptorPath: /Assembly-Hifi-only-VGP3.ga | ||
| testParameterFiles: | ||
| - /Assembly-Hifi-only-VGP3-tests.yml | ||
| authors: | ||
| - name: Galaxy | ||
| - name: VGP | ||
| url: https://vertebrategenomeproject.org |
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4 changes: 4 additions & 0 deletions
4
workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3/CHANGELOG.md
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,9 @@ | ||
| # Changelog | ||
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| ## [0.1.1] 2023-11-20 | ||
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| - Fix author in dockstore | ||
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| ## [0.1] - 2023-09-26 | ||
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| Addition of the workflow to the iwc repository. |
6 changes: 5 additions & 1 deletion
6
workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/.dockstore.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,11 @@ | ||
| version: 1.2 | ||
| workflows: | ||
| - name: main | ||
| primaryDescriptorPath: /Assembly-decontamination-VGP9.ga | ||
| subclass: Galaxy | ||
| publish: true | ||
| primaryDescriptorPath: /Assembly-decontamination-VGP9.ga | ||
| testParameterFiles: | ||
| - /Assembly-decontamination-VGP9-tests.yml | ||
| authors: | ||
| - name: Nadolina Brajuka | ||
| url: https://github.com/Nadolina |
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4 changes: 4 additions & 0 deletions
4
workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/CHANGELOG.md
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,9 @@ | ||
| # Changelog | ||
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| ## [0.1.3] 2023-11-20 | ||
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| - Fix author in dockstore | ||
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| ## [0.1.2] 2023-11-20 | ||
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| ### Automatic update | ||
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7 changes: 6 additions & 1 deletion
7
workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/.dockstore.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,10 @@ | ||
| version: 1.2 | ||
| workflows: | ||
| - name: main | ||
| primaryDescriptorPath: /Purge-duplicate-contigs-VGP6.ga | ||
| subclass: Galaxy | ||
| publish: true | ||
| primaryDescriptorPath: /Purge-duplicate-contigs-VGP6.ga | ||
| authors: | ||
| - name: Galaxy | ||
| - name: VGP | ||
| url: https://vertebrategenomeproject.org |
4 changes: 4 additions & 0 deletions
4
workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/CHANGELOG.md
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,9 @@ | ||
| # Changelog | ||
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| ## [0.3.3] 2023-11-20 | ||
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| - Fix author in dockstore | ||
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| ## [0.3.2] - 2023-11-15 | ||
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| ### Added | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,12 @@ | ||
| version: 1.2 | ||
| workflows: | ||
| - name: main | ||
| primaryDescriptorPath: /Scaffolding-HiC-VGP8.ga | ||
| subclass: Galaxy | ||
| publish: true | ||
| primaryDescriptorPath: /Scaffolding-HiC-VGP8.ga | ||
| testParameterFiles: | ||
| - /Scaffolding-HiC-VGP8-tests.yml | ||
| authors: | ||
| - name: VGP | ||
| url: https://vertebrategenomeproject.org | ||
| - name: Galaxy |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,9 @@ | ||
| # Changelog | ||
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| ## [0.2.1] 2023-11-20 | ||
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| - Fix author in dockstore | ||
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| ## [0.2] - 2023-11-15 | ||
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| ### Added | ||
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9 changes: 8 additions & 1 deletion
9
workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/.dockstore.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,12 @@ | ||
| version: 1.2 | ||
| workflows: | ||
| - name: main | ||
| primaryDescriptorPath: /kmer-profiling-hifi-VGP1.ga | ||
| subclass: Galaxy | ||
| publish: true | ||
| primaryDescriptorPath: /kmer-profiling-hifi-VGP1.ga | ||
| testParameterFiles: | ||
| - /kmer-profiling-hifi-VGP1-tests.yml | ||
| authors: | ||
| - name: VGP | ||
| url: https://vertebrategenomeproject.org | ||
| - name: Galaxy |
4 changes: 4 additions & 0 deletions
4
workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,9 @@ | ||
| # Changelog | ||
|
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| ## [0.1.5] 2023-11-20 | ||
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| - Fix author in dockstore | ||
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| ## [0.1.4] 2023-11-15 | ||
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| ### Added | ||
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||
File renamed without changes.
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7 changes: 6 additions & 1 deletion
7
workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/.dockstore.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,12 @@ | ||
| version: 1.2 | ||
| workflows: | ||
| - name: main | ||
| primaryDescriptorPath: /kmer-profiling-hifi-trio-VGP2.ga | ||
| subclass: Galaxy | ||
| publish: true | ||
| primaryDescriptorPath: /kmer-profiling-hifi-trio-VGP2.ga | ||
| testParameterFiles: | ||
| - /kmer-profiling-hifi-trio-VGP2-tests.yml | ||
| authors: | ||
| - name: VGP | ||
| url: https://vertebrategenomeproject.org | ||
| - name: Galaxy |
4 changes: 4 additions & 0 deletions
4
workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/CHANGELOG.md
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,9 @@ | ||
| # Changelog | ||
|
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| ## [0.1.3] 2023-11-20 | ||
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| - Fix author in dockstore | ||
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| ## [0.1.2] 2023-11-09 | ||
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| ### Automatic update | ||
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||
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8 changes: 7 additions & 1 deletion
8
workflows/computational-chemistry/fragment-based-docking-scoring/.dockstore.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,13 @@ | ||
| version: 1.2 | ||
| workflows: | ||
| - name: main | ||
| primaryDescriptorPath: /fragment-based-docking-scoring.ga | ||
| subclass: Galaxy | ||
| publish: true | ||
| primaryDescriptorPath: /fragment-based-docking-scoring.ga | ||
| testParameterFiles: | ||
| - /fragment-based-docking-scoring-tests.yml | ||
| authors: | ||
| - name: Simon Bray | ||
| orcid: 0000-0002-0621-6705 | ||
| - name: Tim Dudgeon | ||
| orcid: 0000-0001-6879-5194 |
4 changes: 4 additions & 0 deletions
4
workflows/computational-chemistry/fragment-based-docking-scoring/CHANGELOG.md
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,9 @@ | ||
| # Changelog | ||
|
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| ## [0.1.5] 2023-11-20 | ||
|
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| - Fix author in dockstore | ||
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| ## [0.1.4] 2023-02-14 | ||
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| ### Fixed | ||
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6 changes: 5 additions & 1 deletion
6
workflows/computational-chemistry/gromacs-dctmd/.dockstore.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,11 @@ | ||
| version: 1.2 | ||
| workflows: | ||
| - name: main | ||
| primaryDescriptorPath: /gromacs-dctmd.ga | ||
| subclass: Galaxy | ||
| publish: true | ||
| primaryDescriptorPath: /gromacs-dctmd.ga | ||
| testParameterFiles: | ||
| - /gromacs-dctmd-tests.yml | ||
| authors: | ||
| - name: Simon Bray | ||
| orcid: 0000-0002-0621-6705 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,9 @@ | ||
| # Changelog | ||
|
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| ## [0.1.5] 2023-11-20 | ||
|
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| - Fix author in dockstore | ||
|
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| ## [0.1.4] 2023-11-10 | ||
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| ### Automatic update | ||
|
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||
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6 changes: 5 additions & 1 deletion
6
workflows/computational-chemistry/gromacs-mmgbsa/.dockstore.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,11 @@ | ||
| version: 1.2 | ||
| workflows: | ||
| - name: main | ||
| primaryDescriptorPath: /gromacs-mmgbsa.ga | ||
| subclass: Galaxy | ||
| publish: true | ||
| primaryDescriptorPath: /gromacs-mmgbsa.ga | ||
| testParameterFiles: | ||
| - /gromacs-mmgbsa-tests.yml | ||
| authors: | ||
| - name: Simon Bray | ||
| orcid: 0000-0002-0621-6705 |
5 changes: 5 additions & 0 deletions
5
workflows/computational-chemistry/gromacs-mmgbsa/CHANGELOG.md
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6 changes: 5 additions & 1 deletion
6
workflows/computational-chemistry/protein-ligand-complex-parameterization/.dockstore.yml
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,11 @@ | ||
| version: 1.2 | ||
| workflows: | ||
| - name: main | ||
| primaryDescriptorPath: /protein-ligand-complex-parameterization.ga | ||
| subclass: Galaxy | ||
| publish: true | ||
| primaryDescriptorPath: /protein-ligand-complex-parameterization.ga | ||
| testParameterFiles: | ||
| - /protein-ligand-complex-parameterization-tests.yml | ||
| authors: | ||
| - name: Simon Bray | ||
| orcid: 0000-0002-0621-6705 |
4 changes: 4 additions & 0 deletions
4
...ws/computational-chemistry/protein-ligand-complex-parameterization/CHANGELOG.md
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,5 +1,9 @@ | ||
| # Changelog | ||
|
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| ## [0.1.4] 2023-11-20 | ||
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| - Fix author in dockstore | ||
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| ## [0.1.3] 2022-05-25 | ||
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| ### Changed | ||
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||
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There is no changelog for 0.1.6 @mvdbeek @Delphine-L