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Updating workflows/epigenetics/cutandrun from 0.3 to 0.4 #184

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planemo-autoupdate
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Hello! This is an automated update of the following workflow: workflows/epigenetics/cutandrun. I created this PR because I think one or more of the component tools are out of date, i.e. there is a newer version available on the ToolShed.

By comparing with the latest versions available on the ToolShed, it seems the following tools are outdated:

  • toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/2.18.2.3 should be updated to toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicatesWithMateCigar/2.18.2.3

The workflow release number has been updated from 0.3 to 0.4.

@lldelisle
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Like for ChIP-SR and PE, I added the normalization option.

@lldelisle
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@mvdbeek you want to have a look or I merge?

@mvdbeek mvdbeek merged commit 7d3bb95 into galaxyproject:main Sep 1, 2023
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mvdbeek commented Sep 1, 2023

Very nice, thank you!

@planemo-autoupdate planemo-autoupdate deleted the workflows/epigenetics/cutandrun branch September 5, 2023 12:57
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3 participants