Merge pull request #291 from lldelisle/add_authors_to_all

Add authors to all workflows

workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/.dockstore.yml

@@ -1,7 +1,14 @@
 version: 1.2
 workflows:
 - name: main
-  primaryDescriptorPath: /Assembly-Hifi-HiC-phasing-VGP4.ga
   subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /Assembly-Hifi-HiC-phasing-VGP4.ga
   testParameterFiles:
   - /Assembly-Hifi-HiC-phasing-VGP4-tests.yml
+  authors:
+  - name: Galaxy
+  - name: VGP
+    url: https://vertebrategenomeproject.org
+  - name: Delphine Lariviere
+    orcid: 0000-0001-6421-3484

workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/Assembly-Hifi-HiC-phasing-VGP4.ga

@@ -19,7 +19,7 @@
     ],
     "format-version": "0.1",
     "license": "CC-BY-4.0",
-    "release": "0.1.6",
+    "release": "0.1.7",
     "name": "Assembly-Hifi-HiC-phasing-VGP4",
     "steps": {
         "0": {

workflows/VGP-assembly-v2/Assembly-Hifi-HiC-phasing-VGP4/CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.1.7] 2023-11-20
+
+- Fix author in dockstore
+
 ## [0.1.5] 2023-11-15
 
 ### Added

workflows/VGP-assembly-v2/Assembly-Hifi-Trio-phasing-VGP5/.dockstore.yml

@@ -1,7 +1,12 @@
 version: 1.2
 workflows:
 - name: main
-  primaryDescriptorPath: /Assembly-Hifi-Trio-phasing-VGP5.ga
   subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /Assembly-Hifi-Trio-phasing-VGP5.ga
   testParameterFiles:
   - /Assembly-Hifi-Trio-phasing-VGP5-tests.yml
+  authors:
+  - name: Galaxy
+  - name: VGP
+    url: https://vertebrategenomeproject.org

workflows/VGP-assembly-v2/Assembly-Hifi-Trio-phasing-VGP5/Assembly-Hifi-Trio-phasing-VGP5.ga

@@ -14,7 +14,7 @@
     ],
     "format-version": "0.1",
     "license": "CC-BY-4.0",
-    "release": "0.1",
+    "release": "0.1.1",
     "name": "Assembly-Hifi-Trio-phasing-VGP5",
     "steps": {
         "0": {

workflows/VGP-assembly-v2/Assembly-Hifi-Trio-phasing-VGP5/CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.1.1] 2023-11-20
+
+- Fix author in dockstore
+
 ## [0.1] - 2023-09-27
 
 Creation of workflow for Trio assembly. 

workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3/.dockstore.yml

@@ -1,7 +1,12 @@
 version: 1.2
 workflows:
 - name: main
-  primaryDescriptorPath: /Assembly-Hifi-only-VGP3.ga
   subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /Assembly-Hifi-only-VGP3.ga
   testParameterFiles:
   - /Assembly-Hifi-only-VGP3-tests.yml
+  authors:
+  - name: Galaxy
+  - name: VGP
+    url: https://vertebrategenomeproject.org

workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3/Assembly-Hifi-only-VGP3.ga

@@ -13,7 +13,7 @@
         }
     ],
     "format-version": "0.1",
-    "release": "0.1",
+    "release": "0.1.1",
     "license": "CC-BY-4.0",
     "name": "Assembly-Hifi-only-VGP3",
     "steps": {

workflows/VGP-assembly-v2/Assembly-Hifi-only-VGP3/CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.1.1] 2023-11-20
+
+- Fix author in dockstore
+
 ## [0.1] - 2023-09-26
 
 Addition of the workflow to the iwc repository.

workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/.dockstore.yml

@@ -1,7 +1,11 @@
 version: 1.2
 workflows:
 - name: main
-  primaryDescriptorPath: /Assembly-decontamination-VGP9.ga
   subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /Assembly-decontamination-VGP9.ga
   testParameterFiles:
   - /Assembly-decontamination-VGP9-tests.yml
+  authors:
+  - name: Nadolina Brajuka
+    url: https://github.com/Nadolina

workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/Assembly-decontamination-VGP9.ga

@@ -10,7 +10,7 @@
     ],
     "format-version": "0.1",
     "license": "BSD-3-Clause",
-    "release": "0.1.2",
+    "release": "0.1.3",
     "name": "Assembly-decontamination-VGP9",
     "steps": {
         "0": {

workflows/VGP-assembly-v2/Assembly-decontamination-VGP9/CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.1.3] 2023-11-20
+
+- Fix author in dockstore
+
 ## [0.1.2] 2023-11-20
 
 ### Automatic update

workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/.dockstore.yml

@@ -1,5 +1,10 @@
 version: 1.2
 workflows:
 - name: main
-  primaryDescriptorPath: /Purge-duplicate-contigs-VGP6.ga
   subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /Purge-duplicate-contigs-VGP6.ga
+  authors:
+  - name: Galaxy
+  - name: VGP
+    url: https://vertebrategenomeproject.org

workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.3.3] 2023-11-20
+
+- Fix author in dockstore
+
 ## [0.3.2] - 2023-11-15
 
 ### Added

workflows/VGP-assembly-v2/Purge-duplicate-contigs-VGP6/Purge-duplicate-contigs-VGP6.ga

@@ -14,7 +14,7 @@
     ],
     "format-version": "0.1",
     "license": "CC-BY-4.0",
-    "release": "0.3.2", 
+    "release": "0.3.3", 
     "name": "Purge-duplicate-contigs-VGP6",
     "steps": {
         "0": {

workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/.dockstore.yml

@@ -1,7 +1,12 @@
 version: 1.2
 workflows:
 - name: main
-  primaryDescriptorPath: /Scaffolding-HiC-VGP8.ga
   subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /Scaffolding-HiC-VGP8.ga
   testParameterFiles:
   - /Scaffolding-HiC-VGP8-tests.yml
+  authors:
+  - name: VGP
+    url: https://vertebrategenomeproject.org
+  - name: Galaxy

workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.2.1] 2023-11-20
+
+- Fix author in dockstore
+
 ## [0.2] - 2023-11-15
 
 ### Added

workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8.ga

@@ -14,7 +14,7 @@
     ],
     "format-version": "0.1",
     "license": "CC-BY-4.0",
-    "release": "0.2",
+    "release": "0.2.1",
     "name": "Scaffolding-HiC-VGP8",
     "steps": {
         "0": {

workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/.dockstore.yml

@@ -1,5 +1,12 @@
 version: 1.2
 workflows:
 - name: main
-  primaryDescriptorPath: /kmer-profiling-hifi-VGP1.ga
   subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /kmer-profiling-hifi-VGP1.ga
+  testParameterFiles:
+  - /kmer-profiling-hifi-VGP1-tests.yml
+  authors:
+  - name: VGP
+    url: https://vertebrategenomeproject.org
+  - name: Galaxy

workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.1.5] 2023-11-20
+
+- Fix author in dockstore
+
 ## [0.1.4] 2023-11-15
 
 ### Added

workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga

@@ -14,7 +14,7 @@
     ],
     "format-version": "0.1",
     "license": "CC-BY-4.0",
-    "release":"0.1.4",
+    "release":"0.1.5",
     "name": "kmer-profiling-hifi-VGP1",
     "steps": {
         "0": {

workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/.dockstore.yml

@@ -1,7 +1,12 @@
 version: 1.2
 workflows:
 - name: main
-  primaryDescriptorPath: /kmer-profiling-hifi-trio-VGP2.ga
   subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /kmer-profiling-hifi-trio-VGP2.ga
   testParameterFiles:
   - /kmer-profiling-hifi-trio-VGP2-tests.yml
+  authors:
+  - name: VGP
+    url: https://vertebrategenomeproject.org
+  - name: Galaxy

workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.1.3] 2023-11-20
+
+- Fix author in dockstore
+
 ## [0.1.2] 2023-11-09
 
 ### Automatic update

workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/kmer-profiling-hifi-trio-VGP2.ga

@@ -14,7 +14,7 @@
     ],
     "format-version": "0.1",
     "license": "CC-BY-4.0",
-    "release": "0.1.2",
+    "release": "0.1.3",
     "name": "kmer-profiling-hifi-trio-VGP2",
     "steps": {
         "0": {

workflows/computational-chemistry/fragment-based-docking-scoring/.dockstore.yml

@@ -1,7 +1,13 @@
 version: 1.2
 workflows:
 - name: main
-  primaryDescriptorPath: /fragment-based-docking-scoring.ga
   subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /fragment-based-docking-scoring.ga
   testParameterFiles:
   - /fragment-based-docking-scoring-tests.yml
+  authors:
+  - name: Simon Bray
+    orcid: 0000-0002-0621-6705
+  - name: Tim Dudgeon
+    orcid: 0000-0001-6879-5194

workflows/computational-chemistry/fragment-based-docking-scoring/CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.1.5] 2023-11-20
+
+- Fix author in dockstore
+
 ## [0.1.4] 2023-02-14
 
 ### Fixed

workflows/computational-chemistry/fragment-based-docking-scoring/fragment-based-docking-scoring.ga

@@ -16,7 +16,7 @@
     "format-version": "0.1",
     "license": "MIT",
     "name": "Fragment-based virtual screening using rDock for docking and SuCOS for pose scoring",
-    "release": "0.1.4",
+    "release": "0.1.5",
     "steps": {
         "0": {
             "annotation": "Number of docking poses to generate per input compound",

workflows/computational-chemistry/gromacs-dctmd/.dockstore.yml

@@ -1,7 +1,11 @@
 version: 1.2
 workflows:
 - name: main
-  primaryDescriptorPath: /gromacs-dctmd.ga
   subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /gromacs-dctmd.ga
   testParameterFiles:
   - /gromacs-dctmd-tests.yml
+  authors:
+  - name: Simon Bray
+    orcid: 0000-0002-0621-6705

workflows/computational-chemistry/gromacs-dctmd/CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.1.5] 2023-11-20
+
+- Fix author in dockstore
+
 ## [0.1.4] 2023-11-10
 
 ### Automatic update

workflows/computational-chemistry/gromacs-dctmd/gromacs-dctmd.ga

@@ -11,7 +11,7 @@
     "format-version": "0.1",
     "license": "MIT",
     "name": "dcTMD calculations with GROMACS",
-    "release": "0.1.4",
+    "release": "0.1.5",
     "steps": {
         "0": {
             "annotation": "Ligand SDF",

workflows/computational-chemistry/gromacs-mmgbsa/.dockstore.yml

@@ -1,7 +1,11 @@
 version: 1.2
 workflows:
 - name: main
-  primaryDescriptorPath: /gromacs-mmgbsa.ga
   subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /gromacs-mmgbsa.ga
   testParameterFiles:
   - /gromacs-mmgbsa-tests.yml
+  authors:
+  - name: Simon Bray
+    orcid: 0000-0002-0621-6705

workflows/computational-chemistry/gromacs-mmgbsa/CHANGELOG.md

@@ -1,5 +1,10 @@
 # Changelog
 
+## [0.1.4] 2023-11-20
+
+- Fix author in dockstore
+- Fix changeset_revision of gmx_solvate
+
 ## [0.1.3] 2022-05-25
 
 ### Changed

workflows/computational-chemistry/gromacs-mmgbsa/gromacs-mmgbsa.ga

@@ -11,7 +11,7 @@
     "format-version": "0.1",
     "license": "MIT",
     "name": "MMGBSA calculations with GROMACS",
-    "release": "0.1.3",
+    "release": "0.1.4",
     "steps": {
         "0": {
             "annotation": "Size of the MMGBSA ensemble",
@@ -1401,7 +1401,7 @@
             },
             "tool_id": "toolshed.g2.bx.psu.edu/repos/chemteam/gmx_solvate/gmx_solvate/2021.3+galaxy1",
             "tool_shed_repository": {
-                "changeset_revision": "61094e01eff9",
+                "changeset_revision": "7568ae18908a",
                 "name": "gmx_solvate",
                 "owner": "chemteam",
                 "tool_shed": "toolshed.g2.bx.psu.edu"

workflows/computational-chemistry/protein-ligand-complex-parameterization/.dockstore.yml

@@ -1,7 +1,11 @@
 version: 1.2
 workflows:
 - name: main
-  primaryDescriptorPath: /protein-ligand-complex-parameterization.ga
   subclass: Galaxy
+  publish: true
+  primaryDescriptorPath: /protein-ligand-complex-parameterization.ga
   testParameterFiles:
   - /protein-ligand-complex-parameterization-tests.yml
+  authors:
+  - name: Simon Bray
+    orcid: 0000-0002-0621-6705

workflows/computational-chemistry/protein-ligand-complex-parameterization/CHANGELOG.md

@@ -1,5 +1,9 @@
 # Changelog
 
+## [0.1.4] 2023-11-20
+
+- Fix author in dockstore
+
 ## [0.1.3] 2022-05-25
 
 ### Changed