VERSION, galaxy/*.xml: Make official 2.0.1 release.

galaxyproject · Oct 24, 2017 · f2efaab · f2efaab
1 parent e9ecb55
commit f2efaab
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Showing 6 changed files with 10 additions and 11 deletions.
diff --git a/VERSION b/VERSION
@@ -1,4 +1,3 @@
 [version]
 project = dunovo
 version_num = 2.0.1
-stage = alpha
diff --git a/galaxy/align_families.xml b/galaxy/align_families.xml
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
-<tool id="align_families" name="Du Novo: Align families" version="0.8.1">
+<tool id="align_families" name="Du Novo: Align families" version="2.0.1">
   <description>of duplex sequencing reads</description>
   <requirements>
     <requirement type="package" version="7.221">mafft</requirement>
-    <requirement type="package" version="0.8.1">dunovo</requirement>
+    <requirement type="package" version="2.0.1">dunovo</requirement>
     <!-- TODO: require Python 2.7 -->
   </requirements>
   <command detect_errors="exit_code">align_families.py --aligner $aligner --galaxy $phone --processes \${GALAXY_SLOTS:-1} '$input' &gt; '$output'

diff --git a/galaxy/correct_barcodes.xml b/galaxy/correct_barcodes.xml
@@ -1,11 +1,11 @@
 <?xml version="1.0"?>
-<tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="0.8.1">
+<tool id="correct_barcodes" name="Du Novo: Correct barcodes" version="2.0.1">
   <description>of duplex sequencing reads</description>
   <requirements>
     <requirement type="package" version="2.2.5">bowtie2</requirement>
     <requirement type="package" version="0.1.18">samtools</requirement>
     <requirement type="package" version="1.9">networkx</requirement>
-    <requirement type="package" version="0.8.1">dunovo</requirement>
+    <requirement type="package" version="2.0.1">dunovo</requirement>
     <!-- TODO: require Python 2.7 -->
   </requirements>
   <command detect_errors="exit_code"><![CDATA[

diff --git a/galaxy/dunovo.xml b/galaxy/dunovo.xml
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
-<tool id="dunovo" name="Du Novo: Make consensus reads" version="0.8.1">
+<tool id="dunovo" name="Du Novo: Make consensus reads" version="2.0.1">
   <description>from duplex sequencing alignments</description>
   <requirements>
-    <requirement type="package" version="0.8.1">dunovo</requirement>
+    <requirement type="package" version="2.0.1">dunovo</requirement>
     <!-- TODO: require Python 2.7 -->
   </requirements>
   <command detect_errors="exit_code">

diff --git a/galaxy/make_families.xml b/galaxy/make_families.xml
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
-<tool id="make_families" name="Du Novo: Make families" version="0.8.1">
+<tool id="make_families" name="Du Novo: Make families" version="2.0.1">
   <description>of duplex sequencing reads</description>
   <requirements>
-    <requirement type="package" version="0.8.1">dunovo</requirement>
+    <requirement type="package" version="2.0.1">dunovo</requirement>
   </requirements>
   <!-- TODO: Add dependency on coreutils to get paste? -->
   <command detect_errors="exit_code">make-families.sh -t $taglen -i $invariant '$fastq1' '$fastq2' &gt; '$output'

diff --git a/galaxy/tool_dependencies.xml b/galaxy/tool_dependencies.xml
@@ -12,10 +12,10 @@
   <package name="networkx" version="1.9">
     <repository name="package_networkx_1_9" owner="iuc"/>
   </package>
-  <package name="dunovo" version="0.8.1">
+  <package name="dunovo" version="2.0.1">
     <install version="1.0">
       <actions>
-        <action type="download_by_url" sha256sum="f85fd35ef67c8f76af0d556a4babe9acf7b8abdd8a77232d4f4763cc7de60eed">https://github.com/galaxyproject/dunovo/archive/v0.8.1.tar.gz</action>
+        <action type="download_by_url">https://github.com/galaxyproject/dunovo/archive/v2.0.1.tar.gz</action>
         <action type="shell_command">make</action>
         <action type="move_directory_files">
           <source_directory>.</source_directory>