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Trimmer.py documentation

Status: Open.

#33 In galaxyproject/dunovo;

· haiderinam opened on Mar 31, 2022

Surface correct.py --allow-no-nm-if-ns in Galaxy

enhancement

Status: Open.

#30 In galaxyproject/dunovo;

· NickSto opened on Jan 28, 2022

Change defaults in 3.0

Status: Open.

#29 In galaxyproject/dunovo;

· NickSto opened on Jan 27, 2022

align-families.py stalls on some inputs

bug

Status: Open.

#28 In galaxyproject/dunovo;

· NickSto opened on Jan 13, 2022

bowtie output sometimes lacks NM tag

bug

Status: Open.

#27 In galaxyproject/dunovo;

· NickSto opened on Dec 7, 2020

Random barcode choices in correct.py

bug

Status: Open.

#25 In galaxyproject/dunovo;

· NickSto opened on Oct 30, 2020

Please document switch to python3

documentation

externalReported by someone elseReported by someone else

Status: Open.

#24 In galaxyproject/dunovo;

· dpryan79 opened on Oct 28, 2020

"Could not locate a Bowtie index corresponding to basename "refdir/barcodes-ref"

bug

externalReported by someone elseReported by someone else

Status: Open.

#23 In galaxyproject/dunovo;

· jmath97 opened on Oct 8, 2020

QC pipeline: Get all tools deployed on Galaxy Main

qcRelates to the JKU duplex QC pipelineRelates to the JKU duplex QC pipeline

Status: Open.

#22 In galaxyproject/dunovo;

· NickSto opened on Oct 25, 2019

QC pipeline: Trim ends of reads

bug

qcRelates to the JKU duplex QC pipelineRelates to the JKU duplex QC pipeline

Status: Open.

#21 In galaxyproject/dunovo;

· NickSto opened on Oct 25, 2019

QC pipeline: Double-counting variants in overlapping mates

bug

qcRelates to the JKU duplex QC pipelineRelates to the JKU duplex QC pipeline

Status: Open.

#20 In galaxyproject/dunovo;

· NickSto opened on Oct 25, 2019

More intelligently identify barcode sequence, based on 5bp linker after it.

enhancement

Status: Open.

#19 In galaxyproject/dunovo;

· NickSto opened on Oct 30, 2018