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Adding a tool to validate VCFs #610

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Adding a tool to validate VCFs #610

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@nh13 nh13 commented Aug 24, 2020

There are other tools out there. The motivation for this tool are:

  1. Validates the VCF header, including against spec-reserved header values (id, type, and count)
  2. Validates types and counts of variants (INFO) and genotypes (FORMAT) fields versus (1)
  3. Allows for custom validators across variants/genotypes
  4. Allows for quickly incorporating other types of validation (all field types, across genotypes/samples/variants/fields etc)
  5. Other tools may not validate the spec strictly, as they are part of Genome Analysis Tool Kits that produce variants, sometimes in non-spec compliant ways. We do not need to make those compromises
  6. In Scala: succinct, concise, and performant.

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@yfarjoun yfarjoun left a comment

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I can't read scala that fluently….so I just commented on the text… :-)

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nh13 commented Aug 24, 2020

@yfarjoun thank-you!

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