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Count the # of Ns in the read ignored in ErrorsRateByReadPositions
enhancement
help wanted
#110
opened Sep 13, 2016 by
nh13
GroupReadsByUmi, CallMolecularConsensusReads and CallDuplexConsensusReads should emit @PG tags
enhancement
help wanted
#192
opened Mar 16, 2017 by
tfenne
FilterConsensusReads should spot unmapped BAMs and not do it's second sort!
enhancement
help wanted
#195
opened Mar 16, 2017 by
tfenne
CorrectUmis should output metrics per end metrics for read pairs along with the template metrics
enhancement
help wanted
#207
opened Apr 10, 2017 by
nh13
A tool that can downsample a BAM many times
enhancement
help wanted
#232
opened May 16, 2017 by
nh13
SamBuilder.addPair should support setting attributes on each end individually.
enhancement
help wanted
#244
opened Jun 6, 2017 by
nh13
Automatically generate Dagr Task from Fgbio Tool Constructors
enhancement
help wanted
#284
opened Sep 25, 2017 by
nh13
Rscript.exec() returns Try[Unit] which I think is a bad idea
enhancement
#397
opened Apr 11, 2018 by
tfenne
Give tools metadata about the command line used
enhancement
help wanted
#439
opened Oct 26, 2018 by
nh13
GroupReadsByUmi Error java.nio.file.NoSuchFileException: /dev/stdin
bug
help wanted
#528
opened Sep 11, 2019 by
Emmalynchen
CorrectUmis: allow for different length UMIs
help wanted
question
#557
opened Dec 20, 2019 by
fgvieira
Request for an optional implicit to provide Variant conversions?
enhancement
help wanted
#561
opened Jan 8, 2020 by
clintval
Calculate the duplication rate/Metrics for non-duplex bam files
help wanted
#571
opened Mar 16, 2020 by
angadps
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