Fix deprecation warnings

src/analysis/plugin/plugin.py

@@ -134,7 +134,7 @@ def get_analysis(self, file_handle: io.FileIO, virtual_file_path: dict, analyses
         # Misses the root uid, which must be added by the scheduler
         tags_dict = {}
         for tag in tags:
-            tag_dict = tag.dict()
+            tag_dict = tag.model_dump()
             name = tag_dict.pop('name')
             tags_dict.update({name: tag_dict})
 
@@ -145,7 +145,7 @@ def get_analysis(self, file_handle: io.FileIO, virtual_file_path: dict, analyses
             'system_version': self.metadata.system_version,
             'summary': summary,
             'tags': tags_dict,
-            'result': result.dict() if result else None,
+            'result': result.model_dump() if result else None,
         }
 
     def get_tags(self, result: Schema, summary: list[str]) -> list[Tag]:

src/config.py

@@ -171,9 +171,9 @@ def load(path: str | None = None):
         When you only import the ``config`` module the ``load`` function will be looked up at runtime.
         See `this blog entry <https://alexmarandon.com/articles/python_mock_gotchas/>`_ for some more information.
     """
-    Common.update_forward_refs()
-    Backend.update_forward_refs()
-    Frontend.update_forward_refs()
+    Common.model_rebuild()
+    Backend.model_rebuild()
+    Frontend.model_rebuild()
     if path is None:
         path = Path(__file__).parent / 'config/fact-core-config.toml'
 
@@ -190,15 +190,15 @@ def load(path: str | None = None):
     preset_dict = {}
     for preset in preset_list:
         p = Common.AnalysisPreset(**preset)
-        preset_dict[p.name] = p.dict()
+        preset_dict[p.name] = p.model_dump()
 
     common_dict['analysis_preset'] = preset_dict
 
     plugin_list = backend_dict.pop('plugin', [])
     plugin_dict = {}
     for plugin in plugin_list:
         p = Backend.Plugin(**plugin)
-        plugin_dict[p.name] = p.dict()
+        plugin_dict[p.name] = p.model_dump()
 
     backend_dict['plugin'] = plugin_dict
 

src/conftest.py

@@ -8,8 +8,8 @@
 from typing import Type, Union
 
 import pytest
-from pydantic import BaseModel, Field
-from pydantic.utils import deep_update
+from pydantic import BaseModel, ConfigDict, Field
+from pydantic.v1.utils import deep_update
 
 import config
 from analysis.PluginBase import AnalysisBasePlugin
@@ -123,7 +123,7 @@ def backend_config(request, common_config, _firmware_file_storage_directory) ->
         },
     }
 
-    test_config.update(common_config.dict())
+    test_config.update(common_config.model_dump())
     test_config = deep_update(test_config, overwrite_config)
 
     return config.Backend(**test_config)
@@ -146,7 +146,7 @@ def frontend_config(request, common_config) -> config.Frontend:
         },
     }
 
-    test_config.update(common_config.dict())
+    test_config.update(common_config.model_dump())
     test_config = deep_update(test_config, overwrite_config)
 
     return config.Frontend(**test_config)
@@ -178,6 +178,8 @@ def patch_config(monkeypatch, common_config, backend_config, frontend_config):
 class AnalysisPluginTestConfig(BaseModel):
     """A class configuring the :py:func:`analysis_plugin` fixture."""
 
+    model_config = ConfigDict(arbitrary_types_allowed=True)
+
     #: The class of the plugin to be tested. It will most probably be called ``AnalysisPlugin``.
     plugin_class: Union[Type[AnalysisBasePlugin], Type[AnalysisPluginV0]] = AnalysisBasePlugin
     #: Whether or not to start the workers (see ``AnalysisPlugin.start``).
@@ -187,9 +189,6 @@ class AnalysisPluginTestConfig(BaseModel):
     #: Not supported for AnalysisPluginV0
     init_kwargs: dict = Field(default_factory=dict)
 
-    class Config:
-        arbitrary_types_allowed = True
-
 
 @pytest.fixture
 def analysis_plugin(request, patch_config):  # noqa: ARG001

src/install/requirements_backend.txt

@@ -8,7 +8,7 @@ pyyaml==6.0.1
 
 # FIXME This is only needed by the compare/file_header plugin
 #       See Issue #832
-flask==2.3.2
+flask==2.3.3
 
 git+https://github.com/fkie-cad/common_helper_yara.git
 

src/install/requirements_frontend.txt

@@ -1,12 +1,12 @@
 bcrypt==4.0.1
-email-validator==1.3.0
+email-validator==1.3.1
 flask-login==0.6.2
 flask-paginate==2022.1.8
-flask-security-too==5.2.0
+flask-security-too==5.3.0
 flask-wtf==1.1.1
-flask==2.3.2
+flask==2.3.3
 flask_restx==1.1.0
-flask_sqlalchemy==3.0.2
+flask_sqlalchemy==3.0.5
 itsdangerous==2.1.2
 matplotlib==3.5.3
 more_itertools==9.0.0
@@ -17,7 +17,7 @@ uwsgi==2.0.22
 virtualenv
 
 # must be below dependent packages (flask, flask-login, flask-restx)
-werkzeug==2.3.4
+werkzeug==2.3.7
 
 # Used for username validation by flask-security
 bleach==5.0.1

src/plugins/analysis/file_system_metadata/test/test_file_system_metadata_routes.py

@@ -1,5 +1,4 @@
 from base64 import b64encode
-from unittest import TestCase
 
 from decorator import contextmanager
 from flask import Flask
@@ -107,7 +106,7 @@ class DbMock:
 
 
 class TestFileSystemMetadataRoutes:
-    def setup(self):
+    def setup_method(self):
         app = Flask(__name__)
         app.config.from_object(__name__)
         app.config['TESTING'] = True
@@ -121,8 +120,8 @@ def test_get_analysis_results_of_parent_fo(self):
         assert 'test_value' in rv.data.decode()
 
 
-class TestFileSystemMetadataRoutesRest(TestCase):
-    def setUp(self):
+class TestFileSystemMetadataRoutesRest:
+    def setup_method(self):
         app = Flask(__name__)
         app.config.from_object(__name__)
         app.config['TESTING'] = True

src/plugins/analysis/qemu_exec/test/test_routes.py

@@ -86,8 +86,8 @@ class DbMock:
     frontend = DbInterfaceMock()
 
 
-class TestFileSystemMetadataRoutes:
-    def setup(self):
+class TestQemuExecRoutes:
+    def setup_method(self):
         app = Flask(__name__)
         app.config.from_object(__name__)
         app.config['TESTING'] = True
@@ -119,8 +119,8 @@ def test_error_inside(self):
         assert 'some error' in response
 
 
-class TestFileSystemMetadataRoutesRest:
-    def setup(self):
+class TestQemuExecRoutesRest:
+    def setup_method(self):
         app = Flask(__name__)
         app.config.from_object(__name__)
         app.config['TESTING'] = True

src/plugins/compare/file_header/code/file_header.py

@@ -1,6 +1,6 @@
 import binascii
 
-from flask import Markup
+from markupsafe import Markup
 
 from compare.PluginBase import CompareBasePlugin
 

src/plugins/compare/file_header/test/test_file_header.py

@@ -1,4 +1,4 @@
-from flask import Markup
+from markupsafe import Markup
 
 from test.unit.compare.compare_plugin_test_class import ComparePluginTest
 

src/test/conftest.py

@@ -2,7 +2,7 @@
 from typing import List, NamedTuple, Type, TypeVar
 
 import pytest
-from pydantic import BaseModel, Extra
+from pydantic import BaseModel, ConfigDict
 from pathlib import Path
 
 import config
@@ -64,7 +64,7 @@ def merge_markers(request, name: str, dtype: Type[T]) -> T:
             if isinstance(argument, dict):
                 marker_dict.update(argument)
             elif isinstance(argument, BaseModel):
-                marker_dict.update(argument.dict())
+                marker_dict.update(argument.model_dump())
         else:
             raise _err
     return dtype(**marker_dict)
@@ -81,6 +81,8 @@ class DatabaseInterfaces(NamedTuple):
 
 
 class MockDataStorage(BaseModel):
+    model_config = ConfigDict(extra='allow')
+
     postgres_server: str
     postgres_port: int
     postgres_database: str
@@ -103,21 +105,17 @@ class MockDataStorage(BaseModel):
     redis_host: str
     redis_port: int
 
-    class Config:
-        extra = Extra.forbid
-
 
 class ConfigCommonMock(BaseModel):
     """This class is a mock of :py:class:`config.Common` which only contains
     postgres and redis configuration.
     """
 
+    model_config = ConfigDict(extra='forbid')
+
     postgres: config.Common.Postgres
     redis: config.Common.Redis
 
-    class Config:
-        extra = Extra.forbid
-
 
 class MockIntercom:
     def __init__(self):

src/test/integration/web_interface/rest/base.py

@@ -2,7 +2,7 @@
 
 
 class RestTestBase:
-    def setup(self):
+    def setup_method(self):
         self.frontend = WebFrontEnd()
         self.frontend.app.config['TESTING'] = True
         self.test_client = self.frontend.app.test_client()

src/test/integration/web_interface/rest/test_rest_binary.py

@@ -12,12 +12,12 @@
 
 @pytest.mark.usefixtures('database_interfaces')
 class TestRestDownload(RestTestBase):
-    def setup(self):
-        super().setup()
+    def setup_method(self):
+        super().setup_method()
         self.db_interface = BackendDbInterface()
         self.test_queue = Queue()
 
-    def teardown(self):
+    def teardown_method(self):
         self.test_queue.close()
 
     def test_rest_download_valid(self, backend_config):

src/test/integration/web_interface/rest/test_rest_statistics.py

@@ -8,8 +8,8 @@
 
 @pytest.mark.usefixtures('database_interfaces')
 class TestRestStatistics(RestTestBase):
-    def setup(self):
-        super().setup()
+    def setup_method(self):
+        super().setup_method()
         self.stats_updater = StatsUpdateDbInterface()
         self.stats_updater.update_statistic(
             'file_type',

src/test/unit/compare/compare_plugin_test_class.py

@@ -9,15 +9,15 @@ class ComparePluginTest:
     PLUGIN_NAME = 'base'
     PLUGIN_CLASS = None
 
-    def setup(self):
+    def setup_method(self):
         self.config = self.generate_config()
         self.config.add_section('expert-settings')
         self.config.set('expert-settings', 'ssdeep-ignore', '80')
         self.compare_plugins = {}
         self.c_plugin = self.setup_plugin()
         self.setup_test_fw()
 
-    def teardown(self):
+    def teardown_method(self):
         gc.collect()
 
     def setup_plugin(self):

src/test/unit/compare/test_plugin_base.py

@@ -14,7 +14,7 @@ def compare_plugin():
     return ComparePlugin(view_updater=CommonDatabaseMock())
 
 
-@pytest.mark.backend_config(
+@pytest.mark.backend_config_overwrite(
     {
         'ssdeep_ignore': 80,
     }

src/test/unit/web_interface/test_plugin_routes.py

@@ -24,7 +24,7 @@ def __init__(self, app, db=None, intercom=None, api=None, status=None):  # noqa:
 
 
 class TestPluginRoutes:
-    def setup(self):
+    def setup_method(self):
         self.app = Flask(__name__)
         self.app.config.from_object(__name__)
         self.api = Api(self.app)