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Commits on Apr 16, 2021

• Add all Python packages (versioned!) to Dockerfile (AlexsLemonade#1008)

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  jashapiro

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Commits on Feb 9, 2021

• Update readme: CAVATICA link and Ns (AlexsLemonade#936)

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  Jo Lynne Rokita

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  jaclyn-taroni

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Commits on Jan 7, 2021

• PBTA Histologies: All subtyping gsea rerun (6 of N) (AlexsLemonade#869)

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Commits on Sep 24, 2020

• quick update of README based on v17 (AlexsLemonade#792)

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  Jo Lynne Rokita

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  jashapiro

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Commits on Sep 16, 2020

• Trim down docker images a bit (AlexsLemonade#776)

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  jashapiro

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Commits on Jun 7, 2020

• Update documentation for package installation (AlexsLemonade#715)

  jashapiro

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Commits on Mar 19, 2020

• Unified color palette set up (AlexsLemonade#622)

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  cansavvy

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Commits on Mar 10, 2020

• Update READMEs (AlexsLemonade#618)

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  Jo Lynne Rokita

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  jaclyn-taroni

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Commits on Mar 9, 2020

• update analysis repo README (AlexsLemonade#616)

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  Jo Lynne Rokita

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Commits on Jan 7, 2020

• Project README update (AlexsLemonade#409)

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  Stephanie

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  jaclyn-taroni

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Commits on Jan 3, 2020

• Analysis doc (AlexsLemonade#396)

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  Stephanie

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  jaclyn-taroni

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Commits on Dec 22, 2019

• Update readme intro data (AlexsLemonade#361)

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Commits on Dec 18, 2019

• Add "modules at a glance" table (AlexsLemonade#345)

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  jaclyn-taroni

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  jashapiro

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• Add requirement for module-specific README (AlexsLemonade#346)

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  jaclyn-taroni

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  cgreene

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Commits on Dec 17, 2019

• Move data format information out of main README and into doc/ (AlexsLemonade#342)

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  jaclyn-taroni

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  jashapiro

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Commits on Dec 9, 2019

• Add shell script and README for collapse-rnaseq (AlexsLemonade#322)

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  jaclyn-taroni

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Commits on Dec 2, 2019

• V11 Release (AlexsLemonade#293)

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  yuankunzhu

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• README change to adjust OS X install for md5sum (AlexsLemonade#302)

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  cgreene

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Commits on Nov 27, 2019

• Add table of contents with doctoc (AlexsLemonade#298)

  jaclyn-taroni

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Commits on Nov 19, 2019

• Add reference FASTA logic to download script (AlexsLemonade#282)

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  jaclyn-taroni

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Commits on Nov 4, 2019

• add cnv interpretation (AlexsLemonade#216)

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  Jo Lynne

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• Typo fixes (AlexsLemonade#218)

  

  jashapiro

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Commits on Nov 1, 2019

• Conda coreutils (AlexsLemonade#212)

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  jashapiro

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• Independent specimen docs (AlexsLemonade#206)

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  jashapiro

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• update seg formats (AlexsLemonade#205)

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  Jo Lynne

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Commits on Oct 31, 2019

• update readme (AlexsLemonade#193)

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  Jo Lynne

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Commits on Oct 9, 2019

• Edits to Circle CI option instructions (AlexsLemonade#154)

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Commits on Oct 4, 2019

• add CI-only variable instructions (AlexsLemonade#147)

  

  cgreene

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Commits on Oct 2, 2019

• FIX: data directory for CI txome dimension reduction (AlexsLemonade#141)

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  jaclyn-taroni

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• Notes about potential gotchas: memory requirement for Docker, subset files (AlexsLemonade#139)

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  jaclyn-taroni

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Commits on Oct 1, 2019

• Add link to Cancer Data Science Slack in README (AlexsLemonade#138)

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  jaclyn-taroni

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Commits on Sep 26, 2019

• Add Rproject file to root (AlexsLemonade#129)

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  jashapiro

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Commits on Aug 29, 2019

• Revert "v3 release update" (AlexsLemonade#87)

  cgreene

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• update clinical data url

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• 📝 resove readme conflict

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