Add bio.tools to the list of registries

README.rst

@@ -142,6 +142,7 @@ looks something like this:
           × has_npm_badge
           ✓ has_pypi_badge
           × has_rsd_badge
+          × has_biotools_badge
           × is_on_github_marketplace
     (4/5) citation
           × has_citation_file
@@ -329,6 +330,7 @@ The manual override will be reflected in the output, as follows:
           × has_npm_badge
           ✓ has_pypi_badge
           × has_rsd_badge
+          × has_biotools_badge
           × is_on_github_marketplace
     (4/5) citation
           × has_citation_file

howfairis/mixins/registry_mixin.py

@@ -22,6 +22,7 @@ def check_registry(self):
                 self.has_npm_badge(),
                 self.has_pypi_badge(),
                 self.has_rsd_badge(),
+                self.has_biotools_badge(),
                 self.is_on_github_marketplace()
             ]
             return True in results
@@ -102,6 +103,11 @@ def has_rsd_badge(self):
                    r"https://img\.shields\.io/badge/rsd-.*"]
         return self._eval_regexes(regexes)
 
+    def has_biotools_badge(self):
+        """ """
+        regexes = [r"https://img\.shields\.io/badge/bio.tools-.*"]
+        return self._eval_regexes(regexes)
+
     def is_on_github_marketplace(self):
         """ """
         result = False

tests/case1/github/snippets/cli-no-args.txt

@@ -20,6 +20,7 @@ Proceeding without it -- expect the compliance to suffer.
       × has_npm_badge
       × has_pypi_badge
       × has_rsd_badge
+      × has_biotools_badge
       ✓ is_on_github_marketplace
 (4/5) citation
       × has_citation_file

tests/case1/github/snippets/cli-with-nonexistent-path.txt

@@ -21,6 +21,7 @@ Proceeding without it -- expect the compliance to suffer.
       × has_npm_badge
       × has_pypi_badge
       × has_rsd_badge
+      × has_biotools_badge
       ✓ is_on_github_marketplace
 (4/5) citation
       × has_citation_file

tests/case1/github/test_checker_no_args.py

@@ -124,6 +124,11 @@ def test_has_rsd_badge(self, mocker):
             checker = get_checker()
             assert checker.has_rsd_badge() is False
 
+    def test_has_biotools_badge(self, mocker):
+        with mocker:
+            checker = get_checker()
+            assert checker.has_biotools_badge() is False
+
     def test_has_zenodo_badge(self, mocker):
         with mocker:
             checker = get_checker()

tests/case1/github/test_checker_with_emptyreasons_user_config.py

@@ -137,6 +137,11 @@ def test_has_rsd_badge(self, mocker):
             checker = get_checker()
             assert checker.has_rsd_badge() is False
 
+    def test_has_biotools_badge(self, mocker):
+        with mocker:
+            checker = get_checker()
+            assert checker.has_biotools_badge() is False
+
     def test_has_zenodo_badge(self, mocker):
         with mocker:
             checker = get_checker()

tests/case1/github/test_checker_with_skipreasons_user_config.py

@@ -137,6 +137,11 @@ def test_has_rsd_badge(self, mocker):
             checker = get_checker()
             assert checker.has_rsd_badge() is False
 
+    def test_has_biotools_badge(self, mocker):
+        with mocker:
+            checker = get_checker()
+            assert checker.has_biotools_badge() is False
+
     def test_has_zenodo_badge(self, mocker):
         with mocker:
             checker = get_checker()

tests/case1/gitlab/snippets/cli-no-args.txt

@@ -20,6 +20,7 @@ Proceeding without it -- expect the compliance to suffer.
       × has_npm_badge
       × has_pypi_badge
       × has_rsd_badge
+      × has_biotools_badge
       × is_on_github_marketplace
 (4/5) citation
       × has_citation_file

tests/case1/gitlab/snippets/cli-with-nonexistent-path.txt

@@ -21,6 +21,7 @@ Proceeding without it -- expect the compliance to suffer.
       × has_npm_badge
       × has_pypi_badge
       × has_rsd_badge
+      × has_biotools_badge
       × is_on_github_marketplace
 (4/5) citation
       × has_citation_file

tests/case1/gitlab/test_checker_no_args.py

@@ -124,6 +124,11 @@ def test_has_rsd_badge(self, mocker):
             checker = get_checker()
             assert checker.has_rsd_badge() is False
 
+    def test_has_biotools_badge(self, mocker):
+        with mocker:
+            checker = get_checker()
+            assert checker.has_biotools_badge() is False
+
     def test_has_zenodo_badge(self, mocker):
         with mocker:
             checker = get_checker()

tests/case1/gitlab/test_checker_with_emptyreasons_user_config.py

@@ -137,6 +137,11 @@ def test_has_rsd_badge(self, mocker):
             checker = get_checker()
             assert checker.has_rsd_badge() is False
 
+    def test_has_biotools_badge(self, mocker):
+        with mocker:
+            checker = get_checker()
+            assert checker.has_biotools_badge() is False
+
     def test_has_zenodo_badge(self, mocker):
         with mocker:
             checker = get_checker()

tests/case1/gitlab/test_checker_with_skipreasons_user_config.py

@@ -137,6 +137,11 @@ def test_has_rsd_badge(self, mocker):
             checker = get_checker()
             assert checker.has_rsd_badge() is False
 
+    def test_has_biotools_badge(self, mocker):
+        with mocker:
+            checker = get_checker()
+            assert checker.has_biotools_badge() is False
+
     def test_has_zenodo_badge(self, mocker):
         with mocker:
             checker = get_checker()

tests/case2/github/snippets/cli-no-args.txt

@@ -16,6 +16,7 @@ url: https://github.com/fair-software/repo1
       ✓ has_npm_badge
       ✓ has_pypi_badge
       ✓ has_rsd_badge
+      ✓ has_biotools_badge
       ✓ is_on_github_marketplace
 (4/5) citation
       ✓ has_citation_file

tests/case2/github/snippets/cli-with-nonexistent-path.txt

@@ -21,6 +21,7 @@ Proceeding without it -- expect the compliance to suffer.
       × has_npm_badge
       × has_pypi_badge
       × has_rsd_badge
+      × has_biotools_badge
       ✓ is_on_github_marketplace
 (4/5) citation
       × has_citation_file

tests/case2/github/test_checker_no_args.py

@@ -124,6 +124,11 @@ def test_has_rsd_badge(self, mocker):
             checker = get_checker()
             assert checker.has_rsd_badge() is True
 
+    def test_has_biotools_badge(self, mocker):
+        with mocker:
+            checker = get_checker()
+            assert checker.has_biotools_badge() is True
+
     def test_has_zenodo_badge(self, mocker):
         with mocker:
             checker = get_checker()

tests/case2/github/test_checker_with_emptyreasons_user_config.py

@@ -137,6 +137,11 @@ def test_has_rsd_badge(self, mocker):
             checker = get_checker()
             assert checker.has_rsd_badge() is True
 
+    def test_has_biotools_badge(self, mocker):
+        with mocker:
+            checker = get_checker()
+            assert checker.has_biotools_badge() is True
+
     def test_has_zenodo_badge(self, mocker):
         with mocker:
             checker = get_checker()

tests/case2/github/test_checker_with_skipreasons_user_config.py

@@ -137,6 +137,11 @@ def test_has_rsd_badge(self, mocker):
             checker = get_checker()
             assert checker.has_rsd_badge() is True
 
+    def test_has_biotools_badge(self, mocker):
+        with mocker:
+            checker = get_checker()
+            assert checker.has_biotools_badge() is True
+
     def test_has_zenodo_badge(self, mocker):
         with mocker:
             checker = get_checker()

tests/case2/gitlab/snippets/cli-no-args.txt

@@ -16,6 +16,7 @@ url: https://gitlab.com/fair-software/repo1
       ✓ has_npm_badge
       ✓ has_pypi_badge
       ✓ has_rsd_badge
+      ✓ has_biotools_badge
       × is_on_github_marketplace
 (4/5) citation
       ✓ has_citation_file

tests/case2/gitlab/snippets/cli-with-nonexistent-path.txt

@@ -21,6 +21,7 @@ Proceeding without it -- expect the compliance to suffer.
       × has_npm_badge
       × has_pypi_badge
       × has_rsd_badge
+      × has_biotools_badge
       × is_on_github_marketplace
 (4/5) citation
       × has_citation_file

tests/case2/gitlab/test_checker_no_args.py

@@ -124,6 +124,11 @@ def test_has_rsd_badge(self, mocker):
             checker = get_checker()
             assert checker.has_rsd_badge() is True
 
+    def test_has_biotools_badge(self, mocker):
+        with mocker:
+            checker = get_checker()
+            assert checker.has_biotools_badge() is True
+
     def test_has_zenodo_badge(self, mocker):
         with mocker:
             checker = get_checker()

tests/case2/gitlab/test_checker_with_emptyreasons_user_config.py

@@ -132,6 +132,11 @@ def test_has_rsd_badge(self, mocker):
             checker = get_checker()
             assert checker.has_rsd_badge() is True
 
+    def test_has_biotools_badge(self, mocker):
+        with mocker:
+            checker = get_checker()
+            assert checker.has_biotools_badge() is True
+
     def test_has_zenodo_badge(self, mocker):
         with mocker:
             checker = get_checker()

tests/case2/gitlab/test_checker_with_skipreasons_user_config.py

@@ -132,6 +132,11 @@ def test_has_rsd_badge(self, mocker):
             checker = get_checker()
             assert checker.has_rsd_badge() is True
 
+    def test_has_biotools_badge(self, mocker):
+        with mocker:
+            checker = get_checker()
+            assert checker.has_biotools_badge() is True
+
     def test_has_zenodo_badge(self, mocker):
         with mocker:
             checker = get_checker()

tests/case2/repo-files/README.rst

@@ -26,3 +26,5 @@
       :target: https://fair-software.eu
 13. .. image:: https://img.shields.io/conan/v/vir-simd
       :target: https://conan.io/center/recipes/vir-simd
+14. .. image:: https://img.shields.io/badge/bio.tools-metabolink-blue
+      :target: https://bio.tools/metabolink

tests/contracts/checker.py

@@ -93,6 +93,10 @@ def test_has_pypi_badge(self, mocked_context: Mocker):
     def test_has_rsd_badge(self, mocked_context: Mocker):
         pass
 
+    @abstractmethod
+    def test_has_biotools_badge(self, mocked_context: Mocker):
+        pass
+
     @abstractmethod
     def test_has_zenodo_badge(self, mocked_context: Mocker):
         pass