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@anitamnd anitamnd commented Sep 4, 2025

Checklist

  • Code follows the contributing guidelines of the project
  • This PR solves an existing issue and provided solution was discussed
  • The fix has been locally tested
  • Code follows the project's coding standards
  • Unit tests covering the new feature have been added
  • All existing tests pass
  • The documentation has been updated to reflect the new feature

List of related issues or pull requests

Briefly describe the changes made in this pull request

  • Addition of bio.tools to the list of checked registries.

Instructions to review the pull request

# make a new temporary directory and cd into it
cd $(mktemp -d --tmpdir howfairis.XXXXXX)

# get a copy of the repo
git clone https://github.com/fair-software/howfairis .

# checkout the work from this branch 
git checkout <this branch>

# create a virtual environment named venv3
python3 -m venv venv3

# activate the virtual environment
source venv3/bin/activate

# update pip and friends
python3 -m pip install --upgrade pip wheel setuptools

# install runtime dependencies
python3 -m pip install .

# and, if you need it, the development tools
python3 -m pip install .[dev]

Keep what you need from below, extend as necessary

# run the unit tests
pytest

# tests against a live infrastructure
pytest livetests/

# cli tests
bash clitests/script.sh

# run linter
prospector

# import style
isort --check-only howfairis

# any additional steps for checking

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