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CodonAdaptationIndex Public
Forked from Benjamin-Lee/CodonAdaptationIndexPython Implementation of Codon Adaptation Index
Jupyter Notebook MIT License UpdatedFeb 14, 2025 -
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CryptoFLC1RNAseq Public
Cryptococcus neoformans RNA-seq analysis for effect of FLC1 on transcriptome
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2024-DExB2 Public
Forked from edinburgh-bto/2024-DExB22024 delivery of Data Exploration in Biology 2nd year course
MIT License UpdatedSep 2, 2024 -
test_public_withmirror Public
Test repository as public repository with a private mirror
UpdatedSep 2, 2024 -
2024_Cryptococcus_Ssd1motifs Public
Ssd1-binding motifs in Cryptococcus neoformans
HTML MIT License UpdatedJul 30, 2024 -
CryptoWakeupRNASeq Public
Cryptococcus neoformans RNA-seq Wakeup experiment from 2017, reanalyzed 2022.
HTML MIT License UpdatedJul 5, 2024 -
CryptoGat201RNASeq Public
Cryptococcus neoformans RNA-seq Gat201 strains 2021.
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Gat201homology_2022 Public
Analysis of homology of Cryptococcus neoformans Gat201 and related GATA-family transcription factors
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CryptoGat201_2023_suppdata Public
Supplementary data for Gat201 paper, May 2023.
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tidyqpcr Public
Forked from ropensci/tidyqpcrquantitative PCR analysis with the tidyverse
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drummondlab.github.io Public
Forked from drummondlab/drummondlab.github.ioDrummond Lab site
HTML UpdatedApr 19, 2024 -
Pbp2_CRAC_analysis Public
Forked from JingQiChong/Pbp2_CRAC_analysisAnalysis on the CRAC sequencing data of yeast RNA binding protein Pbp2/Hek1
HTML UpdatedApr 18, 2024 -
chimera_project_manuscript Public
Forked from DimmestP/chimera_project_manuscriptJupyter Notebook UpdatedApr 15, 2024 -
SedSeqQuant Public
Forked from jabard89/SedSeqQuantR package for performing SedSeq analysis
C++ MIT License UpdatedFeb 6, 2024 -
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SSD_SP_Motif Public
Forked from TristanSones-Dykes/SSD_SP_MotifHTML GNU General Public License v3.0 UpdatedNov 7, 2023 -
nextflow_paired_reads_pipeline Public
Forked from DimmestP/nextflow_paired_reads_pipelineNextflow Apache License 2.0 UpdatedOct 31, 2023 -
good-enough-practices Public
Forked from carpentries-lab/good-enough-practicesGood Enough Practices in Scientific Computing
Python Other UpdatedAug 31, 2023 -
demo-RNAFracQuant Public
Forked from thebestecho/demo-RNAFracQuantA demo r package RNAFracQuant
C++ UpdatedAug 1, 2023 -
rnaseq_dough Public
RNA-seq analysis of yeast during bread dough fermentation for teaching Autumn 2023
MIT License UpdatedJun 30, 2023 -
DEB_development Public
Developing a data exploration course for second year
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Gat201_RTqPCR_Assay Public
Forked from elizhughes/Gat201_RTqPCR_AssayRTqPCR of WT, Gat201 deletion, Complemented clones C26 and C30. Genes tested Gat201, Gat204 and Liv3. 3 reference genes.
HTML UpdatedMay 9, 2023 -
RPMI_YPD_PRAssay Public
Forked from elizhughes/RPMI_YPD_PRAssayTest growth of WT H99 and Gat 201 deletion mutants 003 (Madhani) and 004 (Bahn) in RPMI and YPD at 37 degrees.
HTML UpdatedMay 2, 2023 -
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PR_Gat201targets Public
Forked from elizhughes/PR_Gat201targetsTo check the phenotype of downstream targets of GAT201 in RPMI at 37 degrees
UpdatedMay 2, 2023 -
CrossSpeciesExonAnalysis Public
Forked from nickywhiff/CrossSpeciesExonAnalysisPerl MIT License UpdatedFeb 2, 2023 -
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Khd1_CRAC_analysis Public
Forked from JingQiChong/Khd1_CRAC_analysisAnalysis on the CRAC sequencing data of yeast RNA binding protein Khd1/Hek2
HTML UpdatedOct 7, 2022