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fixed wrongly parsed single-tip trees (issue 124) #169

fixed wrongly parsed single-tip trees (issue 124)

fixed wrongly parsed single-tip trees (issue 124) #169

Workflow file for this run

on:
push:
branches:
- main
- master
pull_request:
branches:
- main
- master
name: revdep-check
jobs:
mem-check:
runs-on: macOS-latest
name: revdepcheck ${{ matrix.config.deps }}, macOS, R release
strategy:
fail-fast: false
matrix:
config:
- {deps: 'Depends'}
- {deps: 'Suggests'}
- {deps: 'Imports'}
env:
_R_CHECK_CRAN_INCOMING_: true # Seemingly not set by --as-cran
_R_CHECK_FORCE_SUGGESTS_: false # CRAN settings
R_COMPILE_AND_INSTALL_PACKAGES: 'never'
_R_CHECK_THINGS_IN_CHECK_DIR_: false
R_REMOTES_STANDALONE: true
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
_R_CHECK_CRAN_INCOMING_USE_ASPELL_: false # Set to true when can figure how to install aspell on Windows
RSPM: ${{ matrix.config.rspm }}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: release
- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = 'soft'), ".github/depends.Rds", version = 2)
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
shell: Rscript {0}
- name: Cache R packages
uses: actions/cache@v2
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
- name: Install dependencies
run: |
remotes::install_github("r-lib/revdepcheck")
remotes::install_deps(dependencies = 'soft')
shell: Rscript {0}
- name: Check reverse dependencies (${{ matrix.config.deps }})
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
run: |
revdepcheck::revdep_check(timeout = 60 * 15, num_workers = 3,
dependencies = "${{ matrix.config.deps }}")
problems <- readLines('revdep/problems.md', warn = FALSE)
if (length(problems) > 1) stop(paste0(problems, collapse= "\n"))
shell: Rscript {0}
- name: Upload check results
if: failure()
uses: actions/upload-artifact@main
with:
name: revdep-${{ matrix.config.deps }}-results
path: revdep/*.md