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alignment
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Home
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javelina
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Useful
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Workflows for germline short variant discovery with GATK4
Pipeline for structural variation detection in cohorts
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Accelerated genomics workflows in the Workflow Description Language
WDL workflows for variant calling and assembly using ONT
WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus
WDL workflows for the NIH CARD long-read sequencing project
These workflows have moved; see https://github.com/vgteam/vg_wdl and specifically the giraffedv branch for current versions.