Variational autoencoder for metagenomic binning

Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation

Remove human reads from a sequencing run

geNomad: Identification of mobile genetic elements

Sample Contamination Estimate from VCF

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index