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Initial Readme explaining the script and inputs
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@RSWilson1
RSWilson1 committed Sep 7, 2023
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Expand Up @@ -29,7 +29,8 @@ and bed file aligned with the respecive annotation.
index should be present in the same folder.
- The output file suffix for the outputed .bed file.
- Flanking (int): The required flanking either side of the transcripts selected.
- Assembly summary - corresponding assembly report file for the refseq.gff.
- Assembly summary - corresponding assembly report file for the refseq.gff, this is used
to determine the corresponding chromosome for each transcript.

## Requirements
- pysam
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